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(-) Description

Title :  1.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE BRANCHED-CHAIN AMINO ACID TRANSPORTER SUBSTRATE BINDING PROTEIN LIVJ FROM STREPTOCOCCUS PNEUMONIAE STR. CANADA MDR_19A IN COMPLEX WITH ISOLEUCINE
 
Authors :  A. S. Halavaty, M. Kudritska, Z. Wawrzak, P. J. Stogios, V. Yim, A. Savch W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  17 Aug 12  (Deposition) - 05 Sep 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Amino Acid-Binding Protein, Surface-Exposed Protein, Vaccine, Infection, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Niaid, National Institute Of Allergy And Infectious Diseases, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, M. Kudritska, Z. Wawrzak, P. J. Stogios, V. Yim, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 0 Angstrom Resolution Crystal Structure Of The Branched-Chain Amino Acid Transporter Substrate Binding Protein Livj From Streptococcus Pneumoniae Str. Canada Mdr_19A In Complex With Isoleucine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN-BRANCHED CHAIN AMINO ACID TRANSPORT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 637987
    Strain: CANADA MDR_19A
    Synonym: BRANCHED-CHAIN AMINO ACID TRANSPORTER SUBSTRATE BINDING PROTEIN LIVJ

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2ILE1Mod. Amino AcidISOLEUCINE
3MG3Ligand/IonMAGNESIUM ION
4MLY1Mod. Amino AcidN-DIMETHYL-LYSINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:56 , ALA A:116 , THR A:117 , SER A:118 , SER A:139 , ALA A:140 , THR A:141 , TYR A:189 , TYR A:238 , ASP A:262 , GLY A:263 , PHE A:315BINDING SITE FOR RESIDUE ILE A 401
2AC2SOFTWAREHOH A:605 , HOH A:656 , HOH A:861 , HOH A:1105 , HOH A:1106 , HOH A:1107BINDING SITE FOR RESIDUE MG A 402
3AC3SOFTWAREASP A:229 , HOH A:737 , HOH A:1080 , HOH A:1081 , HOH A:1082 , HOH A:1083BINDING SITE FOR RESIDUE MG A 403
4AC4SOFTWAREASP A:302 , HOH A:975 , HOH A:1085 , HOH A:1087 , HOH A:1088BINDING SITE FOR RESIDUE MG A 404
5AC5SOFTWAREASN A:247 , GLN A:248 , HOH A:573 , HOH A:1009BINDING SITE FOR RESIDUE CL A 405
6AC6SOFTWAREASP A:255 , LYS A:256 , HOH A:1112BINDING SITE FOR RESIDUE CL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GNR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:114 -Pro A:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GNR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GNR)

(-) Exons   (0, 0)

(no "Exon" information available for 4GNR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4gnra_ A: automated matches                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhhhhhh....eee...hhhhhhhhhhhhhhh...eee..............eee...hhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhh....eee...hhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhh......eeeee........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh...eee..eee...........eeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gnr A  39 KTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKGAKNSGEIKDNLAkTKDFEGVTGQTSFDADHNTVKTAYMMTMNNGKVEAAEVVKPI 401
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338      |348       358       368       378       ||
                                                                                                                                                                                                                                                                                                                                            345-MLY                                  386|
                                                                                                                                                                                                                                                                                                                                                                                      401
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GNR)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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