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(-) Description

Title :  CRYSTAL STRUCTURE OF HETEROSUBTYPIC FAB S139/1 IN COMPLEX WITH INFLUENZA A H3 HEMAGGLUTININ
 
Authors :  P. S. Lee, D. C. Ekiert, I. A. Wilson
Date :  16 Aug 12  (Deposition) - 03 Oct 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,H,I,J,L,M,N
Keywords :  Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. S. Lee, R. Yoshida, D. C. Ekiert, N. Sakai, Y. Suzuki, A. Takada, I. A. Wilson
Heterosubtypic Antibody Recognition Of The Influenza Virus Hemagglutinin Receptor Binding Site Enhanced By Avidity.
Proc. Natl. Acad. Sci. Usa V. 109 17040 2012
PubMed-ID: 23027945  |  Reference-DOI: 10.1073/PNAS.1212371109

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1 CHAIN
    Chains: A, C, E
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC
    Expression System Strain: HIGH FIVE
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 28-346
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 392809
    Strain: A/VICTORIA/3/1975 H3N2
 
Molecule 2 - HEMAGGLUTININ HA2 CHAIN
    Chains: B, D, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC
    Expression System Strain: HIGH FIVE
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 347-522
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 392809
    Strain: A/VICTORIA/3/1975 H3N2
 
Molecule 3 - FAB S139/1 LIGHT CHAIN
    Chains: L, M, N
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC DUAL
    Expression System Strain: HIGH FIVE
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Strain: S139/1
 
Molecule 4 - FAB S139/1 HEAVY CHAIN
    Chains: H, I, J
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PFASTBAC DUAL
    Expression System Strain: HIGH FIVE
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Strain: S139/1

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFHIJLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 72)

Asymmetric/Biological Unit (7, 72)
No.NameCountTypeFull Name
1BMA7Ligand/IonBETA-D-MANNOSE
2GOL2Ligand/IonGLYCEROL
3MAN8Ligand/IonALPHA-D-MANNOSE
4NAG33Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PCA3Mod. Amino AcidPYROGLUTAMIC ACID
6PG41Ligand/IonTETRAETHYLENE GLYCOL
7SO418Ligand/IonSULFATE ION

(-) Sites  (69, 69)

Asymmetric Unit (69, 69)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:38 , THR A:318 , LEU B:52BINDING SITE FOR RESIDUE NAG A 501
02AC2SOFTWAREASN A:63 , PHE A:94 , NAG A:503BINDING SITE FOR RESIDUE NAG A 502
03AC3SOFTWARENAG A:502BINDING SITE FOR RESIDUE NAG A 503
04AC4SOFTWAREASN A:126BINDING SITE FOR RESIDUE NAG A 504
05AC5SOFTWAREASN A:165 , THR A:167 , NAG A:506 , SER C:219BINDING SITE FOR RESIDUE NAG A 505
06AC6SOFTWAREILE A:242 , NAG A:505 , BMA A:507 , PRO C:221 , TRP C:222BINDING SITE FOR RESIDUE NAG A 506
07AC7SOFTWARENAG A:506 , MAN A:508 , MAN A:509 , TRP C:222BINDING SITE FOR RESIDUE BMA A 507
08AC8SOFTWAREBMA A:507 , SER I:74BINDING SITE FOR RESIDUE MAN A 508
09AC9SOFTWAREBMA A:507BINDING SITE FOR RESIDUE MAN A 509
10BC1SOFTWARESER A:45 , ASN A:285 , VAL A:297 , NAG A:511BINDING SITE FOR RESIDUE NAG A 510
11BC2SOFTWARENAG A:510 , GLU B:69BINDING SITE FOR RESIDUE NAG A 511
12BC3SOFTWAREARG A:57BINDING SITE FOR RESIDUE SO4 A 512
13BC4SOFTWAREASP A:144 , SER A:145 , THR H:57 , TYR H:59BINDING SITE FOR RESIDUE SO4 A 513
14BC5SOFTWAREVAL A:102 , PRO A:103 , ASP A:104 , TYR A:105BINDING SITE FOR RESIDUE SO4 A 514
15BC6SOFTWAREGLU A:89 , TYR A:105 , ARG A:109 , ARG A:269BINDING SITE FOR RESIDUE SO4 A 515
16BC7SOFTWARELYS A:50 , GLY A:275 , THR A:276BINDING SITE FOR RESIDUE SO4 A 516
17BC8SOFTWAREASN B:154 , THR B:156BINDING SITE FOR RESIDUE NAG B 201
18BC9SOFTWAREARG B:127 , HIS B:159 , ASP B:160 , LYS D:139BINDING SITE FOR RESIDUE SO4 B 202
19CC1SOFTWARELYS B:139 , ARG F:127 , HIS F:159 , ASP F:160BINDING SITE FOR RESIDUE SO4 B 203
20CC2SOFTWARETRP B:14 , GLU B:15 , GLY B:16 , ARG B:25BINDING SITE FOR RESIDUE SO4 B 204
21CC3SOFTWARELYS A:307 , ARG B:54 , LEU B:99BINDING SITE FOR RESIDUE GOL B 205
22CC4SOFTWAREASN C:38 , THR C:318 , LEU D:52BINDING SITE FOR RESIDUE NAG C 501
23CC5SOFTWAREASN C:63 , PHE C:94 , NAG C:503BINDING SITE FOR RESIDUE NAG C 502
24CC6SOFTWARENAG C:502BINDING SITE FOR RESIDUE NAG C 503
25CC7SOFTWAREASN C:126BINDING SITE FOR RESIDUE NAG C 504
26CC8SOFTWAREASN C:165 , THR C:167 , NAG C:506 , SER E:219BINDING SITE FOR RESIDUE NAG C 505
27CC9SOFTWAREILE C:242 , NAG C:505 , BMA C:507 , PRO E:221 , TRP E:222BINDING SITE FOR RESIDUE NAG C 506
28DC1SOFTWARENAG C:506 , MAN C:508 , MAN C:509 , TRP E:222BINDING SITE FOR RESIDUE BMA C 507
29DC2SOFTWAREBMA C:507BINDING SITE FOR RESIDUE MAN C 508
30DC3SOFTWAREBMA C:507BINDING SITE FOR RESIDUE MAN C 509
31DC4SOFTWARESER C:45 , ASN C:285 , VAL C:297 , NAG C:511BINDING SITE FOR RESIDUE NAG C 510
32DC5SOFTWARENAG C:510 , BMA C:512 , GLU D:69BINDING SITE FOR RESIDUE NAG C 511
33DC6SOFTWARENAG C:511BINDING SITE FOR RESIDUE BMA C 512
34DC7SOFTWAREARG C:57 , LYS C:83 , ARG E:57BINDING SITE FOR RESIDUE SO4 C 513
35DC8SOFTWAREASP C:144 , SER C:145 , THR I:57 , TYR I:59BINDING SITE FOR RESIDUE SO4 C 514
36DC9SOFTWAREASN C:81 , ASN C:122 , ARG C:150 , SER E:278BINDING SITE FOR RESIDUE SO4 C 515
37EC1SOFTWAREASN D:154 , THR D:156BINDING SITE FOR RESIDUE NAG D 201
38EC2SOFTWAREARG D:127 , HIS D:159 , ASP D:160 , LYS F:139BINDING SITE FOR RESIDUE SO4 D 202
39EC3SOFTWARETRP D:14 , GLU D:15 , GLY D:16 , ARG D:25BINDING SITE FOR RESIDUE SO4 D 203
40EC4SOFTWARELYS C:307 , ARG D:54BINDING SITE FOR RESIDUE GOL D 204
41EC5SOFTWAREASN E:38 , THR E:318 , NAG E:502 , LEU F:52BINDING SITE FOR RESIDUE NAG E 501
42EC6SOFTWARETHR E:40 , NAG E:501 , BMA E:503BINDING SITE FOR RESIDUE NAG E 502
43EC7SOFTWARENAG E:502 , MAN E:504BINDING SITE FOR RESIDUE BMA E 503
44EC8SOFTWAREBMA E:503BINDING SITE FOR RESIDUE MAN E 504
45EC9SOFTWAREASN E:63 , PHE E:94 , NAG E:506BINDING SITE FOR RESIDUE NAG E 505
46FC1SOFTWARENAG E:505 , BMA E:507BINDING SITE FOR RESIDUE NAG E 506
47FC2SOFTWARENAG E:506BINDING SITE FOR RESIDUE BMA E 507
48FC3SOFTWAREASN E:126 , NAG E:509BINDING SITE FOR RESIDUE NAG E 508
49FC4SOFTWARENAG E:508BINDING SITE FOR RESIDUE NAG E 509
50FC5SOFTWARESER A:219 , ASN E:165 , THR E:167 , NAG E:511BINDING SITE FOR RESIDUE NAG E 510
51FC6SOFTWAREPRO A:221 , TRP A:222 , ILE E:242 , NAG E:510 , BMA E:512BINDING SITE FOR RESIDUE NAG E 511
52FC7SOFTWARETRP A:222 , NAG E:511 , MAN E:513 , MAN E:514BINDING SITE FOR RESIDUE BMA E 512
53FC8SOFTWAREBMA E:512BINDING SITE FOR RESIDUE MAN E 513
54FC9SOFTWAREBMA E:512BINDING SITE FOR RESIDUE MAN E 514
55GC1SOFTWARESER E:45 , ASN E:285 , VAL E:297 , NAG E:516BINDING SITE FOR RESIDUE NAG E 515
56GC2SOFTWARENAG E:515 , BMA E:517 , GLU F:69BINDING SITE FOR RESIDUE NAG E 516
57GC3SOFTWARENAG E:516 , MAN E:518BINDING SITE FOR RESIDUE BMA E 517
58GC4SOFTWAREBMA E:517BINDING SITE FOR RESIDUE MAN E 518
59GC5SOFTWAREASP E:144 , SER E:145 , THR J:57 , TYR J:59BINDING SITE FOR RESIDUE SO4 E 519
60GC6SOFTWAREARG C:208 , SER E:95 , TYR E:100 , ARG E:224BINDING SITE FOR RESIDUE PG4 E 520
61GC7SOFTWAREASN F:154 , THR F:156BINDING SITE FOR RESIDUE NAG F 201
62GC8SOFTWARETRP F:14 , GLU F:15 , GLY F:16 , ARG F:25BINDING SITE FOR RESIDUE SO4 F 202
63GC9SOFTWAREASN H:72 , SER H:74 , SER H:75 , NAG H:302BINDING SITE FOR RESIDUE NAG H 301
64HC1SOFTWARENAG H:301BINDING SITE FOR RESIDUE NAG H 302
65HC2SOFTWARETYR H:27 , THR H:28 , TYR H:32BINDING SITE FOR RESIDUE SO4 H 303
66HC3SOFTWAREASN I:72 , SER I:74 , SER I:75BINDING SITE FOR RESIDUE NAG I 301
67HC4SOFTWARETYR I:27 , THR I:28 , TYR I:32BINDING SITE FOR RESIDUE SO4 I 302
68HC5SOFTWAREASN J:72 , SER J:74 , SER J:75BINDING SITE FOR RESIDUE NAG J 301
69HC6SOFTWARETYR J:27 , THR J:28 , TYR J:32BINDING SITE FOR RESIDUE SO4 J 302

(-) SS Bonds  (28, 28)

Asymmetric/Biological Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6B:144 -B:148
7C:14 -D:137
8C:52 -C:277
9C:64 -C:76
10C:97 -C:139
11C:281 -C:305
12D:144 -D:148
13E:14 -F:137
14E:52 -E:277
15E:64 -E:76
16E:97 -E:139
17E:281 -E:305
18F:144 -F:148
19H:22 -H:92
20H:140 -H:195
21I:22 -I:92
22J:22 -J:92
23J:140 -J:195
24L:23 -L:88
25L:134 -L:194
26M:23 -M:88
27N:23 -N:88
28N:134 -N:194

(-) Cis Peptide Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1Asn A:54 -Pro A:55
2Asn C:54 -Pro C:55
3Asn E:54 -Pro E:55
4Tyr L:94 -Pro L:95
5Tyr L:140 -Pro L:141
6Phe H:146 -Pro H:147
7Glu H:148 -Pro H:149
8Trp H:188 -Pro H:189
9Tyr M:94 -Pro M:95
10Tyr M:140 -Pro M:141
11Phe I:146 -Pro I:147
12Glu I:148 -Pro I:149
13Tyr N:94 -Pro N:95
14Tyr N:140 -Pro N:141
15Phe J:146 -Pro J:147
16Glu J:148 -Pro J:149
17Trp J:188 -Pro J:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GMS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GMS)

(-) Exons   (0, 0)

(no "Exon" information available for 4GMS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4gmsa_ A: Hemagglutinin                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......eeeee.eeeeee..eee....eeeeee.......eeeeee......eeeeeeeee..hhhhhhhhhh....eeeee....eeee...............eeeeeeeee....eeeeeeee.eeee.eeee......eeee....eeeee..eee..eee.....ee......eeee.ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms A   10 GATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGKICNNPHRILDGINCTLIDALLGDPHCDGFQNEKWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFINEGFNWTGVTQNGGSSACKRGPDSGFFSRLNWLYKSGSTYPVQNVTMPNNDNSDKLYIWGVHHPSTDKEQTNLYVQASGKVTVSTKRSQQTIIPNVGSRPWVRGLSSRISIYWTIVKPGDILVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIGTCSSECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE  325
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319      


Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains d4gmsb_ B: Influenza hemagglutinin (stalk)                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms B    1 GIFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDVYRDEALNNRF  171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 


Chain C from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4gmsc_ C: Hemagglutinin                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......eeeee.eeeeee..eee....eeeeee.......eeeeee......eeeeeeeee..hhhhhhhhhh....eeeee....eeee...............eeeeeeeee....eeeeeeee.eeee.eeee......eeee....eeeee..eee..ee......ee......eeee.ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms C   10 GATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGKICNNPHRILDGINCTLIDALLGDPHCDGFQNEKWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFINEGFNWTGVTQNGGSSACKRGPDSGFFSRLNWLYKSGSTYPVQNVTMPNNDNSDKLYIWGVHHPSTDKEQTNLYVQASGKVTVSTKRSQQTIIPNVGSRPWVRGLSSRISIYWTIVKPGDILVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIGTCSSECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE  325
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319      


Chain D from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains d4gmsd_ D: Influenza hemagglutinin (stalk)                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms D    1 GIFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDVYRDEALNNRF  171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 


Chain E from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4gmse_ E: Hemagglutinin                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......eeeee.eeeeee..eee....eeeeee.......eeeeee......eeeeeeeee..hhhhhhhhhh....eeeee....eeee...............eeeeeeeee....eeeeeeee.eeee.eeee......eeee....eeeee..eee..ee......ee......eeee.ee......eee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms E   10 GATLCLGHHAVPNGTLVKTITNDQIEVTNATELVQSSSTGKICNNPHRILDGINCTLIDALLGDPHCDGFQNEKWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFINEGFNWTGVTQNGGSSACKRGPDSGFFSRLNWLYKSGSTYPVQNVTMPNNDNSDKLYIWGVHHPSTDKEQTNLYVQASGKVTVSTKRSQQTIIPNVGSRPWVRGLSSRISIYWTIVKPGDILVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIGTCSSECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE  325
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319      


Chain F from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains d4gmsf_ F: Influenza hemagglutinin (stalk)                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms F    1 GIFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDSEMNKLFEKTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDVYRDEALNNRF  171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 


Chain H from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeeee....eeee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee.....eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms H    1 xVQLQQSGTELKKPGASVKISCKATGYTFSSYWIEWIKQRPGHGLEWIGEILPEIGMTNYNENFKGKATFTANTSSNTVYMQLSSLTSEDSAVYYCARPYDYSWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR  213
                            |       10        20        30        40        50  |     59        69        79   |||  86        96    |  105       115       125       135       145       155       165       175       185       195       205        
                            1-PCA                                             52A                            82A||               100A                                                                                                                 
                                                                                                              82B|                                                                                                                                    
                                                                                                               82C                                                                                                                                    


Chain I from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...ee......eeeeeeee..hhhhh.eeeeee.....eeeeeeee....eeee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee.....eeee...eeee.....eeeee...eeeeeeeee..........hhhhh....eee........eeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4gms I    1 xVQLQQSGTELKKPGASVKISCKATGYTFSSYWIEWIKQRPGHGLEWIGEILPEIGMTNYNENFKGKATFTANTSSNTVYMQLSSLTSEDSAVYYCARPYDYSWFAYWGQGTLVTVTTAPSVYPLAPSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQYTLSSSVTVTSSTAHPASSTK  205
                            |       10        20        30        40        50  |     59        69        79   |||  86        96    |  105     ||119      |136       146       156       166    || 179       199      
                            1-PCA                                             52A                            82A||               100A        111|       126|                                  171|         187|       
                                                                                                              82B|                            116        134                                   175          198       
                                                                                                               82C                                                                                                    


Chain J from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeeee...eeeeeeeee....eeee.hhhh..eeeeee....eeeeee...hhhhheeeeeeee.....eeee...eeeee........eeeee.....eeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeee..........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms J    1 xVQLQQSGTELKKPGASVKISCKATGYTFSSYWIEWIKQRPGHGLEWIGEILPEIGMTNYNENFKGKATFTANTSSNTVYMQLSSLTSEDSAVYYCARPYDYSWFAYWGQGTLVTVSAAKTTAPSVYPLAPVSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR  213
                            |       10        20        30        40        50  |     59        69        79   |||  86        96    |  105       115       125 ||    141       151       161       171       181       191       201       211  
                            1-PCA                                             52A                            82A||               100A                        127|                                                                               
                                                                                                              82B|                                            134                                                                               
                                                                                                               82C                                                                                                                              


Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains d4gmsl1 L:1-107 automated matches                                                                          d4gmsl2 L:108-211 automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhhheeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms L    1 DIVMTQSQKFMSTSVGDRVSVTCKASQNVDTNVAWYQEKPGQSPKTLIYSASNRYSGVPDRFTGSASGTDFTLTITNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR  211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 


Chain M from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                             
               SCOP domains d4gmsm1 M:1-107 automated matches                                                                          ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee....eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..eeeeeeee......eeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4gms M    1 DIVMTQSQKFMSTSVGDRVSVTCKASQNVDTNVAWYQEKPGQSPKTLIYSASNRYSGVPDRFTGSASGTDFTLTITNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIKRADAAPTVSIFPSVVCFLNNFYPKDIGVLNSWTDQDSKDSTYSMSSTLT  180
                                    10        20        30        40        50        60        70        80        90       100       110       131       141  ||   164       174      
                                                                                                                                                119|          144|                      
                                                                                                                                                 131           158                      


Chain N from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d4gmsn1 N:1-107 automated matches                                                                          d4gmsn2 N:108-213 automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeee..........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gms N    1 DIVMTQSQKFMSTSVGDRVSVTCKASQNVDTNVAWYQEKPGQSPKTLIYSASNRYSGVPDRFTGSASGTDFTLTITNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
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(-) SCOP Domains  (4, 11)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GMS)

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(no "Pfam Domain" information available for 4GMS)

(-) Gene Ontology  (17, 17)

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4gmt