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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN/OLIGOPEPTIDE ABC TRANSPORTER(OPPAIV) FROM BORRELIA BURGDORFERI
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  13 Aug 12  (Deposition) - 19 Sep 12  (Release) - 19 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Abc Transporter, Transporter, Peptide Binding, Unknown Peptide, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Fairman, J. Abendroth, B. Sankaran, B. L. Staker
X-Ray Crystal Structure Of A Periplasmic Oligopeptide-Binding Protein/Oligopeptide Abc Transporter(Oppaiv) From Borrelia Burgdorferi
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OLIGOPEPTIDE ABC TRANSPORTER OPPAIV
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 24-530
    Gene: OPPAIV, BB_B16
    Organism Scientific: BORRELIA BURGDORFERI B31
    Organism Taxid: 224326
    Strain: B31
 
Molecule 2 - PEPTIDE OF UNKNOWN SEQUENCE
    Chains: C, D
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: PROTEIN PURIFIED BOUND TO THIS PEPTIDE WITH UNKNOWN SEQUENCE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1UNK8Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 4GL8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GL8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:299 -Pro A:300
2Lys B:299 -Pro B:300

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GL8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GL8)

(-) Exons   (0, 0)

(no "Exon" information available for 4GL8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:500
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..............hhhhhhhhh......eee......eee..eeeeee.....eeeeee............hhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhh...hhhhh.eeeee..eeeee......hhhhhhhhhhhh..hhhhhhhhhhhh...........eeeeeee...eeeeee.....hhhhh...eeeee...hhhhhhhhhhh....eee...hhhhhhhhh....eeeeeeeeeeeeee........hhhhhhhhhhh.hhhhhhhhh.....ee....................hhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee....ee..........hhhhhee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gl8 A  30 KLVFKLNIGSEPATLDAQLINDTVGSGIVSQMFLGILDGDPRTGGYRPGLAKSWDISDDGVVYTFHLRDNLVWSDGVSITAEGIRKSYLRILDKETGSSFVNMIKSVIKNAEEYFDGKANESELGIKALDEKTLEITLKSPKPYFLDMLVHQTFIPVPMHVIEKYGQRWTDPENMVVSGPFKLKSRVLNEKVVLEKNNKYYNSKDVVLDSIIFFVTDNSITAYNMYLNDELDAIFKNVPPDLLKDLKLRDDYYSMGINSTSFYSLNMKVKPLDNVKVRKALSFAIDRKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGYPNGNNFPLLKVKYNTSDSQRKIAEFIQNQWKKNLNINVQLENEEWSTYINSRVNGNYEIIRSGWSGDYADPMTFLSIFQTENTSFSSYGYSNSEYDELLIKSDNERDIFKRQEILKKAEAIIIERDFPAVFLNITSSSYLFRNDKWKGWEPNISERFNLSEIKPI 529
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529


Chain B from PDB  Type:PROTEIN  Length:500
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..............hhhhhhhhh......eee......eee..eeeeee.....eeeeee............hhhhhhhhhhhhhhhhhh..hhhhhhh...hhhhhhh...hhhhh.eeeee..eeeee......hhhhhhhhhhhh..hhhhhhhhhhhh...........eeeeeee...eeeeee.....hhhhh...eeeee...hhhhhhhhhhh....eee...hhhhhhhhh....eeeeeeeeeeeeee........hhhhhhhhhhh.hhhhhhhh......ee....................hhhhhhhhhhhh.hhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee....ee..........hhhhhee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gl8 B  30 KLVFKLNIGSEPATLDAQLINDTVGSGIVSQMFLGILDGDPRTGGYRPGLAKSWDISDDGVVYTFHLRDNLVWSDGVSITAEGIRKSYLRILDKETGSSFVNMIKSVIKNAEEYFDGKANESELGIKALDEKTLEITLKSPKPYFLDMLVHQTFIPVPMHVIEKYGQRWTDPENMVVSGPFKLKSRVLNEKVVLEKNNKYYNSKDVVLDSIIFFVTDNSITAYNMYLNDELDAIFKNVPPDLLKDLKLRDDYYSMGINSTSFYSLNMKVKPLDNVKVRKALSFAIDRKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGYPNGNNFPLLKVKYNTSDSQRKIAEFIQNQWKKNLNINVQLENEEWSTYINSRVNGNYEIIRSGWSGDYADPMTFLSIFQTENTSFSSYGYSNSEYDELLIKSDNERDIFKRQEILKKAEAIIIERDFPAVFLNITSSSYLFRNDKWKGWEPNISERFNLSEIKPI 529
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529


Chain C from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 4gl8 C   0 xxxx   3
                            ||||
                            0-UNK
                             1-UNK
                              2-UNK
                               3-UNK


Chain D from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 4gl8 D   0 xxxx   3
                            ||||
                            ||||
                            0-UNK
                             1-UNK
                              2-UNK
                               3-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GL8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GL8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GL8)

(-) Gene Ontology  (2, 2)

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