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(-) Description

Title :  STRUCTURE OF THE C-TERMINAL MOTOR DOMAIN OF KAR3 FROM CANDIDA GLABRATA
 
Authors :  D. Duan, J. S. Allingham
Date :  13 Aug 12  (Deposition) - 03 Oct 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinesin-14 Motor Domain With Neck, Atpase, Mitotic Kinesin, Vik1, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Duan, Z. Jia, M. Joshi, J. Brunton, M. Chan, D. Drew, D. Davis, J. S. Allingham
Neck Rotation And Neck Mimic Docking In The Noncatalytic Kar3-Associated Protein Vik1.
J. Biol. Chem. V. 287 40292 2012
PubMed-ID: 23043140  |  Reference-DOI: 10.1074/JBC.M112.416529

(-) Compounds

Molecule 1 - NECK AND C-TERMINAL MOTOR DOMAIN OF KAR3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: BL21(DE3) RIL CODON PLUS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 324-692
    Gene: CAGL0D04994G
    Organism Common: YEAST
    Organism Scientific: CANDIDA GLABRATA
    Organism Taxid: 284593
    Strain: ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:442 , ADP A:702 , HOH A:808 , HOH A:815 , HOH A:816 , HOH A:823BINDING SITE FOR RESIDUE MG A 701
2AC2SOFTWAREARG A:356 , ARG A:358 , PRO A:359 , LEU A:361 , GLN A:436 , THR A:437 , GLY A:438 , SER A:439 , GLY A:440 , LYS A:441 , THR A:442 , TYR A:443 , MG A:701 , HOH A:808 , HOH A:815BINDING SITE FOR RESIDUE ADP A 702
3AC3SOFTWAREILE A:483 , ASN A:485 , GLU A:486 , HIS A:563 , SER A:615 , LYS A:642 , LEU A:643BINDING SITE FOR RESIDUE EDO A 703
4AC4SOFTWARETHR B:442 , ADP B:702 , HOH B:804 , HOH B:812 , HOH B:813 , HOH B:823BINDING SITE FOR RESIDUE MG B 701
5AC5SOFTWAREARG B:356 , ARG B:358 , PRO B:359 , LEU B:361 , GLN B:436 , GLY B:438 , SER B:439 , GLY B:440 , LYS B:441 , THR B:442 , TYR B:443 , MG B:701 , HOH B:811 , HOH B:812 , HOH B:821 , HOH B:823BINDING SITE FOR RESIDUE ADP B 702
6AC6SOFTWAREILE B:483 , TYR B:484 , ASN B:485 , GLU B:486 , ARG B:561 , SER B:611 , HOH B:824BINDING SITE FOR RESIDUE EDO B 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GKR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GKR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GKR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GKR)

(-) Exons   (0, 0)

(no "Exon" information available for 4GKR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.............eee...hhhhh.eeeeee.....eeeeee.eee....hhhhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhh...hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeee......eeee....eeee.....ee..hhhhhhhhhhhh.hhhhhhhhh.eeeeeeeeeee......eeeeeeeeee........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gkr A 350 NIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLSINKSLSCLGDVIHALNSKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 685
                                   359       369       379       389       399       409       419       429       439       449       459       469       479       489   ||  514       524       534       544|      561       571       581       591    || 615       625  ||   639       649       659       669       679      
                                                                                                                                                                         493|                                544|                                         596|              628|                                                    
                                                                                                                                                                          509                                 552                                          611               633                                                    


Chain B from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.............eeeeeee....eeeeeee.....eeeeee.eee....hhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhh...hhhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeee........eeee....eeee.....ee..hhhhhhhhhhhhhhhhh.hhhhhh.eeeeeeeeeee......eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gkr B 349 GNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLRETQSINKSLSCLGDVIHALNHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKMIT 690
                                   358       368       378       388       398       408       418       428       438       448       458       468       478       488     ||511       521       531       541       556       566       576       586       606       616       626||     643       653       663       673       683       
                                                                                                                                                                           494|                                      549|                                     595|                  627|                                                       
                                                                                                                                                                            508                                       555                                      606                   635
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GKR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GKR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GKR)

(-) Gene Ontology  (30, 30)

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4gkp 4gkq