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(-) Description

Title :  STRUCTURAL ANALYSIS OF HUMAN CDC20 SUPPORTS MULTI-SITE DEGRON RECOGNITION BY APC/C
 
Authors :  X. Luo, W. Tian, D. R. Tomchick
Date :  06 Aug 12  (Deposition) - 07 Nov 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Cycle, Mitosis, Securin, Ubiquitination, Wd40 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Tian, B. Li, R. Warrington, D. R. Tomchick, H. Yu, X. Luo
Structural Analysis Of Human Cdc20 Supports Multisite Degro Recognition By Apc/C.
Proc. Natl. Acad. Sci. Usa V. 109 18419 2012
PubMed-ID: 23091007  |  Reference-DOI: 10.1073/PNAS.1213438109
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELL DIVISION CYCLE PROTEIN 20 HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC
    Expression System Taxid: 7108
    Expression System Vector Type: VIRUS
    Gene: CDC20
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P55CDC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:177 , ILE A:216 , HOH A:921BINDING SITE FOR RESIDUE MRD A 501
2AC2SOFTWARELEU A:208 , SER A:210 , ASP A:215 , VAL A:255 , GLN A:353 , HOH A:930 , HOH A:1007BINDING SITE FOR RESIDUE MRD A 502
3AC3SOFTWAREHIS A:292 , SER A:338 , ALA A:339BINDING SITE FOR RESIDUE MRD A 503
4AC4SOFTWAREARG A:286 , SER A:309 , PRO A:453 , ASP A:454 , HOH A:802 , HOH A:917BINDING SITE FOR RESIDUE MRD A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GGC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:420 -Ala A:421
2Tyr A:430 -Pro A:431

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GGC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GGC)

(-) Exons   (0, 0)

(no "Exon" information available for 4GGC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee............eee....eeeeee..eeeeee.....eeeeee.......eeeeee.....eeeeee...eeeeee....eeeeeee.....eeeeeee..eeeeee...eeeeee......eeeeee.....eeeeee.....eeeeee....eeeee...........eee......eeeeee......eeeeee.....eeeeee.....eeeeee....eeeeeee....eeeeee......eeeee.....eeeee......eeeeee......eeeee...eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ggc A 165 CRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 477
                                   174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GGC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GGC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GGC)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:420 - Ala A:421   [ RasMol ]  
    Tyr A:430 - Pro A:431   [ RasMol ]  
 

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  4ggc
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  CDC20_HUMAN | Q12834
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CDC20_HUMAN | Q12834: 4gga 4ggd 4n14 5g04 5khr 5khu 5lcw

(-) Related Entries Specified in the PDB File

4gga THE SAME PROTEIN WITH BOUND MPD AT MUCH HIGHER RESOLUTION.