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(-) Description

Title :  SHV-1 BETA-LACTAMASE IN COMPLEX WITH PENAM SULFONE SA1-204
 
Authors :  F. Van Den Akker, K. Wei
Date :  31 Jul 12  (Deposition) - 31 Jul 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Class A Beta-Lactamase, Hydrolase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Ke, P. Pattanaik, C. R. Bethel, A. Sheri, J. D. Buynak, R. A. Bonomo, F. Van Den Akker
Structures Of Shv-1 Beta-Lactamase With Penem And Penam Sulfone Inhibitors That Form Cyclic Intermediates Stabilize By Carbonyl Conjugation
Plos One V. 7 49035 2012
PubMed-ID: 23145056  |  Reference-DOI: 10.1371/JOURNAL.PONE.0049035

(-) Compounds

Molecule 1 - BETA-LACTAMASE SHV-1
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BLA, SHV1
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573
    Synonym: PIT-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
117K1Ligand/Ion(3R)-N-(2-FORMYLINDOLIZIN-3-YL)-4-[(PHENYLACETYL)OXY]-3-SULFINO-D-VALINE
2MA42Ligand/IonCYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:70 , TYR A:105 , SER A:130 , VAL A:216 , LEU A:220 , LYS A:234 , THR A:235 , GLY A:236 , ALA A:237 , ARG A:244 , ASN A:276 , MA4 A:303 , HOH A:433 , HOH A:465 , HOH A:565 , HOH A:625 , HOH A:627 , HOH A:629BINDING SITE FOR RESIDUE 17K A 301
2AC2SOFTWAREARG A:93 , LYS A:94 , ILE A:95 , HIS A:96 , ARG A:98 , VAL A:224 , PRO A:226 , ALA A:248 , VAL A:261 , ILE A:263 , ALA A:280 , ALA A:284 , GLU A:288 , HOH A:410 , HOH A:431 , HOH A:452 , HOH A:614 , HOH A:639BINDING SITE FOR RESIDUE MA4 A 302
3AC3SOFTWARETHR A:235 , ASN A:276 , ILE A:279 , 17K A:301BINDING SITE FOR RESIDUE MA4 A 303

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:77 -A:123

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:166 -Thr A:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GD6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GD6)

(-) Exons   (0, 0)

(no "Exon" information available for 4GD6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains d4gd6a_ A: beta-Lactamase, class A                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhh....eeeeeeee.....eeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gd6 A  26 SPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQIAGIGAALIEHWQR 292
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235  ||   246     ||257       267       277       287     
                                                                                                                                                                                                                                              238|         252|                                      
                                                                                                                                                                                                                                               240          254
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GD6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GD6)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  BLA1_KLEPN | P0AD64
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  3.5.2.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLA1_KLEPN | P0AD64: 1ong 1q2p 1rcj 1shv 1tdg 1tdl 1vm1 2a3u 2a49 2g2u 2g2w 2h0t 2h0y 2h10 2h5s 2zd8 3c4o 3c4p 3d4f 3mke 3mkf 3mxr 3mxs 3n4i 3oph 3opl 3opp 3opr 3v50 3v5m 4fcf 4fd8 4fh2 4fh4 4gd8 4gdb 4jpm 4mbf 4mbh 4mbk 4r3b 4zam 5ee8

(-) Related Entries Specified in the PDB File

3d4f SHV-1 BETA-LACTAMASE IN COMPLEX WITH LN1-255
4gd8
4gdb