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(-) Description

Title :  CRYSTAL STRUCTURE OF FLIM MIDDLE DOMAIN FROM H. PYLORI
 
Authors :  K. H. Lam, S. W. N. Au
Date :  30 Jul 12  (Deposition) - 08 May 13  (Release) - 03 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Flagellar Motor Switch, Chemotaxis, Flagellation, Flin, Flig, Chey, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. H. Lam, W. W. L. Lam, J. Y. Wong, L. C. Chan, M. Kotaka, T. K. W. Ling, D. Y. Jin, K. M. Ottemann, S. W. N. Au
Structural Basis Of Flig-Flim Interaction In Helicobacter Pylori
Mol. Microbiol. V. 88 798 2013
PubMed-ID: 23614777  |  Reference-DOI: 10.1111/MMI.12222

(-) Compounds

Molecule 1 - FLAGELLAR MOTOR SWITCH PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 31-237
    Gene: FLIM
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 85962
    Strain: 26695
    Synonym: FLIM

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GC8)

(-) Sites  (0, 0)

(no "Site" information available for 4GC8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GC8)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Ser A:100 -Pro A:101
2Lys A:110 -Pro A:111
3Gly A:135 -Lys A:136
4Ser B:100 -Pro B:101
5Lys B:110 -Pro B:111
6Ser C:100 -Pro C:101
7Lys C:110 -Pro C:111

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GC8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GC8)

(-) Exons   (0, 0)

(no "Exon" information available for 4GC8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeehhhhhh......eeeeeee...eeeeeeeehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.............eeeeeeeeeee..eeeeeeeeeehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gc8 A  47 RVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANVVQIVAQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKM 230
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226    


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeehhhhhh......eeeeeee...eeeeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.............eeeeeeeeeee..eeeeeeeeeehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gc8 B  48 VSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGREFSDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANVVQIVAQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKM 230
                                    57        67        77        87        97       107       117       127      |146       156       166       176       186       196       206       216       226    
                                                                                                                134|                                                                                      
                                                                                                                 144                                                                                      


Chain C from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeehhhhhhh.....eeeeee......eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.............eeeeeeeeeee..eeeeeeeeeehhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gc8 C  48 VSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGREFSDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANVVQIVAQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKM 230
                                    57        67        77        87        97       107       117       127      |146       156       166       176       186       196       206       216       226    
                                                                                                                134|                                                                                      
                                                                                                                 144
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GC8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GC8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GC8)

(-) Gene Ontology  (3, 3)

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  Cis Peptide Bonds
    Gly A:135 - Lys A:136   [ RasMol ]  
    Lys A:110 - Pro A:111   [ RasMol ]  
    Lys B:110 - Pro B:111   [ RasMol ]  
    Lys C:110 - Pro C:111   [ RasMol ]  
    Ser A:100 - Pro A:101   [ RasMol ]  
    Ser B:100 - Pro B:101   [ RasMol ]  
    Ser C:100 - Pro C:101   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O25675_HELPY | O25675: 4fq0

(-) Related Entries Specified in the PDB File

4fq0 COMPLEX STRUCTURE OF FLIM-FLIG