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(-) Description

Title :  STRUCTURE OF PAEM, A COLICIN M-LIKE BACTERIOCIN PRODUCED BY PSEUDOMONAS AERUGINOSA
 
Authors :  T. Touze, M. Graille, D. Mengin-Lecreulx
Date :  20 Jul 12  (Deposition) - 12 Sep 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Colicin-M Like, Peptidoglycan Degrading Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Barreteau, M. Tiouajni, M. Graille, N. Josseaume, A. Bouhss, D. Patin, D. Blanot, M. Fourgeaud, J. L. Mainardi, M. Arthur, H. Van Tilbeurgh, D. Mengin-Lecreulx, T. Touze
Functional And Structural Characterization Of Paem, A Colicin M-Like Bacteriocin Produced By Pseudomonas Aeruginosa.
J. Biol. Chem. V. 287 37395 2012
PubMed-ID: 22977250  |  Reference-DOI: 10.1074/JBC.M112.406439

(-) Compounds

Molecule 1 - PHOSPHODIESTERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: EXA13, PAEM
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric/Biological Unit (3, 19)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2MG1Ligand/IonMAGNESIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:211 , GLU A:213 , ASP A:241 , HOH A:464 , HOH A:832 , HOH A:833BINDING SITE FOR RESIDUE MG A 301
02AC2SOFTWAREARG A:217 , ARG A:237 , ALA A:238 , TYR A:239 , HOH A:488BINDING SITE FOR RESIDUE EDO A 302
03AC3SOFTWAREASN A:209 , PHE A:245 , ASN A:246 , ASN A:249 , HIS A:250 , HOH A:403 , HOH A:461 , HOH A:656BINDING SITE FOR RESIDUE EDO A 303
04AC4SOFTWAREVAL A:2 , MSE A:3 , ARG A:165 , VAL A:223 , SER A:225 , GLN A:229 , TRP A:230 , SER A:231BINDING SITE FOR RESIDUE EDO A 304
05AC5SOFTWAREALA A:201 , GLY A:208 , ASN A:209 , SER A:248 , ASN A:249 , HIS A:250 , HOH A:424 , HOH A:451BINDING SITE FOR RESIDUE EDO A 305
06AC6SOFTWARETYR A:198 , ALA A:199 , LYS A:202 , EDO A:310 , HOH A:626 , HOH A:773BINDING SITE FOR RESIDUE EDO A 306
07AC7SOFTWAREGLY A:6 , THR A:7 , THR A:8 , ASN A:51 , TRP A:205BINDING SITE FOR RESIDUE EDO A 307
08AC8SOFTWAREGLY A:13 , GLN A:14 , GLN A:44 , LEU A:242 , EDO A:311 , HOH A:573BINDING SITE FOR RESIDUE EDO A 308
09AC9SOFTWAREPRO A:162 , GLU A:164 , MSE A:187 , GLY A:188 , PRO A:280 , GLY A:281 , HOH A:465 , HOH A:601 , HOH A:676BINDING SITE FOR RESIDUE EDO A 309
10BC1SOFTWAREASN A:171 , TYR A:198 , EDO A:306 , HOH A:756 , HOH A:773 , HOH A:776BINDING SITE FOR RESIDUE EDO A 310
11BC2SOFTWAREGLY A:13 , GLN A:14 , GLY A:15 , ASP A:16 , LEU A:242 , EDO A:308 , HOH A:535 , HOH A:552BINDING SITE FOR RESIDUE EDO A 311
12BC3SOFTWAREPRO A:34 , GLY A:38 , LEU A:78 , PHE A:80 , GLU A:84 , HOH A:661BINDING SITE FOR RESIDUE EDO A 312
13BC4SOFTWARESER A:18 , ALA A:19 , GLN A:114 , ASN A:115 , HOH A:528 , HOH A:684 , HOH A:797BINDING SITE FOR RESIDUE EDO A 313

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G75)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile A:126 -Pro A:127

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G75)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G75)

(-) Exons   (0, 0)

(no "Exon" information available for 4G75)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...........................hhhhhhhhhhhhh....ee.hhhhhh...hhhhhhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhhh...eeeeeeeeeeee....eeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhh......eeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g75 A   2 VmDLGTTTIVAGQGDFSAYNYGNNGANWPAPSPAQVGYISKGQRDVAYVNGDWEKPLLALWAQWANWGTTLYGYPSLPFPNYEFIWDIFDLPQADYNQFSLGDDRITAmNRAQNHQYPFPNNEGIPSWDRPKIDTFNGGVYTPAAAFAHYLTGKGKKmNFPIERLNIKPNVKAmPQFIGVLTSSPmGQTTVDFNVPYATAKDSWVAGNTVGEITLRIVGILVKSTSGQWSFRGEIRAYDDLYDFNPSNHRTETAEGmTRLGREVGQKFKDTTPYPIGIPGAIPVNISGRSHH 293
                             |      11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   |   181     | 191       201       211       221       231       241       251      |261       271       281       291  
                             |                                                                                                        110-MSE                                          159-MSE         175-MSE     187-MSE                                                                258-MSE                               
                             3-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G75)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G75)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G75)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ile A:126 - Pro A:127   [ RasMol ]  
 

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  4g75
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 Related Entries

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UniProtKB/TrEMBL
        Q1W548_PSEAI | Q1W548: 4g76

(-) Related Entries Specified in the PDB File

4g76