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(-) Description

Title :  HUMAN THYMIDYLATE SYNTHASE M190K WITH BOUND 4-BROMOBENZENE-1,2,3-TRIOL
 
Authors :  L. R. Celeste, L. Lebioda
Date :  19 Jul 12  (Deposition) - 24 Jul 13  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (1x)
Biol. Unit 2:  X  (2x)
Keywords :  Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. R. Celeste, L. L. Lovelace, L. Lebioda
Oxidation Of Cysteine 195 Of Huyman Thymidylate Synthase By Purpurogallin
To Be Published 2012
PubMed: search

(-) Compounds

Molecule 1 - THYMIDYLATE SYNTHASE
    ChainsX
    EC Number2.1.1.45
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTSO80
    Expression System StrainTX61-
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneTYMS, TS, OK/SW-CL.29
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit X
Biological Unit 1 (1x)X
Biological Unit 2 (2x)X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2CSD1Mod. Amino Acid3-SULFINOALANINE
3PBX1Ligand/Ion4-BROMOBENZENE-1,2,3-TRIOL
4SO42Ligand/IonSULFATE ION
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
1CME1Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2CSD1Mod. Amino Acid3-SULFINOALANINE
3PBX1Ligand/Ion4-BROMOBENZENE-1,2,3-TRIOL
4SO42Ligand/IonSULFATE ION
Biological Unit 2 (4, 10)
No.NameCountTypeFull Name
1CME2Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
2CSD2Mod. Amino Acid3-SULFINOALANINE
3PBX2Ligand/Ion4-BROMOBENZENE-1,2,3-TRIOL
4SO44Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECME X:180 , TRP X:182 , LEU X:189 , LEU X:192 , PRO X:193BINDING SITE FOR RESIDUE PBX X 600
2AC2SOFTWAREARG X:78 , ARG X:176 , ARG X:185 , PRO X:305 , THR X:306 , HOH X:745BINDING SITE FOR RESIDUE SO4 X 601
3AC3SOFTWAREARG X:175 , ASN X:183 , ARG X:185 , ARG X:215 , SER X:216 , HOH X:712BINDING SITE FOR RESIDUE SO4 X 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G6W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G6W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4G6W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain X from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4g6wx_ X: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhheeee.....eeeeeeeeeeeee.............hhhhhhhhhhhhhhh..hhhhhh......hhhhhhh.....hhhhhhh.................hhhhhhhhhhhhh......eeee.hhhhh.........eeeeeeee..eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhh........eeee.....hhhhhhhh.eeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g6w X  27 PHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMcAWNPRDLPLKALPPcHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKME 310
                                    36        46        56        66        76        86        96     ||120       130       140       150       160       170       180       190    |  200       210       220       230       240       250       260       270       280       290       300       310
                                                                                                     102|                                                            180-CME        195-CSD                                                                                                               
                                                                                                      117                                                                                                                                                                                                 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G6W)

(-) Gene Ontology  (52, 52)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYSY_HUMAN | P048181hvy 1hw3 1hw4 1hzw 1i00 1ju6 1juj 1ypv 2onb 2rd8 2rda 3eaw 3ebu 3ed7 3edw 3ef9 3egy 3ehi 3ejl 3gg5 3gh0 3gh2 3h9k 3hb8 3n5e 3n5g 3ob7 4e28 4fgt 4g2o 4gd7 4gyh 4h1i 4jef 4kpw 4o1u 4o1x 4up1 5hs3 5wrn 5x4w 5x4x 5x4y 5x5a 5x5d 5x5q 5x66 5x67 5x69

(-) Related Entries Specified in the PDB File

3ehi SAME STRUCTURE WITH NO LIGANDS
4g2o SAME STRUCTURE WITH PURPUROGALLIN BOUND
4gd7