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(-) Description

Title :  CRYSTAL STRUCTURE OF BETA-HEXOSAMINIDASE 1 FROM BURKHOLDERIA CENOCEPACIA J2315
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  18 Jul 12  (Deposition) - 01 Aug 12  (Release) - 29 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.38
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Niaid, Beta- Hexosaminidase, Structural Genomics, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), D. R. Davies, J. Abendroth, B. Staker, L. Stewart
Crystal Structure Of Beta-Hexosaminidase 1 From Burkholderi Cenocepacia J2315
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-HEXOSAMINIDASE 1
    Chains: A, B
    EC Number: 3.2.1.52
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NAGZ1, NAGZ2, BCEJ2315_10000, BCEJ2315_27960, BCAL1010, BCAL2860
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 216591
    Strain: J2315 / LMG 16656
    Synonym: BETA-HEXOSAMINIDASE 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4G6C)

(-) Sites  (0, 0)

(no "Site" information available for 4G6C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G6C)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Thr A:124 -Pro A:125
2Lys A:170 -His A:171
3Phe A:172 -Pro A:173
4Thr B:124 -Pro B:125
5Lys B:170 -His B:171
6Phe B:172 -Pro B:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G6C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G6C)

(-) Exons   (0, 0)

(no "Exon" information available for 4G6C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.......hhhhhhhhhh..eeeeeehhhhh.hhhhhhhhhhhhhhhh...eeee.eee..ee...........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...ee..............hhhhh...hhhhhhhhhhhhhhhhhhh.....eeee...........ee..hhhhhhhh.hhhhhhhhhhh.eeee...ee......hhhhhhhhhh...........eeeeee..hhhhhh..hhhhhhhhhhhhh..eee...hhhhhhhhhhhh...hhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g6c A   3 TTPGPVMLDVVGTTLSRDDARRLAHPNTGGVILFARHFQNRAQLTALTDSIRAVREDILIAVDHEGGRVQRFRTDGFTVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVLDLDYGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLAGMANCGKHFPGHGFAEAALPTDDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVDKRPAGFSRVWLQDILRGKLGFTGAIFSDDLSMEAAREGGTLTQAADAALAAGCDMVLVCNQPDAAEVVLNGLKASAESVRRIKRMRARGKALKWDKLIAQPEYLQAQALLSSAL 341
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       186       196       206       216       226       236       246       256       266       276       286       296  ||   308       318       328       338   
                                                                                                                                                                                                           180|                                                                                                               299|                                       
                                                                                                                                                                                                            185                                                                                                                302                                       


Chain B from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.......hhhhhhhhh...eeeeeehhhhh.hhhhhhhhhhhhhhhh...eeee.eee..ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..............hhhhh...hhhhhhhhhhhhhhhhhhh.....eeee........ee..hhhhhhhh.hhhhhhhhhhh.eeee...ee......hhhhhhhhhh...........eeeeee....hhhhhhhhhhhh..eeee..hhhhhhhhhhhh....hhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g6c B   4 TPGPVMLDVVGTTLSRDDARRLAHPNTGGVILFARHFQNRAQLTALTDSIRAVREDILIAVDHEGGRVQRFRTDGFTVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVLDLDYGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLAGMANCGKHFPGHGFALPTDDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVDKRPAGFSRVWLQDILRGKLGFTGAIFSDDLSMTLTQAADAALAAGCDMVLVCNQPDAAEVVLNGLKARASAESVRRIKRMRARGKALKWDKLIAQPEYLQAQALLSSALA 342
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173    || 190       200       210       220       230       240       250      |267       277       287       297       307       317       327       337     
                                                                                                                                                                                                        178|                                                                    257|                                                                             
                                                                                                                                                                                                         186                                                                     265
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G6C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G6C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G6C)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4g6c)
 
  Cis Peptide Bonds
    Lys A:170 - His A:171   [ RasMol ]  
    Lys B:170 - His B:171   [ RasMol ]  
    Phe A:172 - Pro A:173   [ RasMol ]  
    Phe B:172 - Pro B:173   [ RasMol ]  
    Thr A:124 - Pro A:125   [ RasMol ]  
    Thr B:124 - Pro B:125   [ RasMol ]  
 

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        B4EA43_BURCJ | B4EA43: 4gnv 4mss

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