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(-) Description

Title :  CRYSTAL STRUCTURE OF A. AEOLICUS NLH1 GAF DOMAIN IN AN INACTIVE STATE
 
Authors :  D. E. Wemmer, J. D. Batchelor, A. Wang, P. Lee, M. Doucleff
Date :  14 Jul 12  (Deposition) - 29 May 13  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gaf Domain, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Batchelor, P. S. Lee, A. C. Wang, M. Doucleff, D. E. Wemmer
Structural Mechanism Of Gaf-Regulated Delta(54) Activators From Aquifex Aeolicus
J. Mol. Biol. V. 425 156 2013
PubMed-ID: 23123379  |  Reference-DOI: 10.1016/J.JMB.2012.10.017

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR NLH1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: GAF DOMAIN
    Gene: NLH1, AQ_218
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4G3K)

(-) Sites  (0, 0)

(no "Site" information available for 4G3K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G3K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G3K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G3K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G3K)

(-) Exons   (0, 0)

(no "Exon" information available for 4G3K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeeee......eeeeee..........hhhhhhh..hhhhh..eee......eeeeeeeeee....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g3k A   2 DLKVEIETLYEVSKILSSSLNLETTVPYIFRLLKKLMGFERLTLTIYDPSTDQIVVRATSSGKFPKEGFKKGEGITGKVWKHGVPIVIPDISQKKIAFIAVPIKSGGKVIGVLSADKEINEKDSLDEYTRFLSMIATLIANSFSLERKVQAERKS 171
                                    11        21        31        41        51        61        71        81        91  ||   116       126       136       146       156       166     
                                                                                                                       94|                                                             
                                                                                                                       110                                                             


Chain B from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...eeeeeee.......eeee....hhhhhhhhh..eee.....eeeeeeeeeee..eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g3k B   2 DLKVEIETLYEVSKILSSSLNLETTVPYIFRLLKKLMGFERLTLTIYDPSTIVVRATSSGGITGKVWKHGVPIVIPDISKKIAFIAVPIKSGGKVIGVLSADKEINDSLDEYTRFLSMIATLIANSFSLERKVQAERKSL 172
                                    11        21        31        41        51||      63|       84       110       120       130     ||142       152       162       172
                                                                             52|      63|                93|                       136|                                 
                                                                              55       75                110                        139
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G3K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G3K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G3K)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O66591_AQUAE | O66591: 4g3w

(-) Related Entries Specified in the PDB File

4g3v 4g3w