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(-) Description

Title :  MCL-1 IN COMPLEX WITH A BIPHENYL CROSS-LINKED NOXA PEPTIDE.
 
Authors :  E. Drake, S. Edwardraja, Q. Lin, A. M. Gulick
Date :  13 Jul 12  (Deposition) - 05 Dec 12  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apoptosis, Bh3 Domain, Bcl-2 Family, Apoptosis-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Muppidi, K. Doi, S. Edwardraja, E. J. Drake, A. M. Gulick, H. G. Wang, Q. Lin
Rational Design Of Proteolytically Stable, Cell-Permeable Peptide-Based Selective Mcl-1 Inhibitors.
J. Am. Chem. Soc. V. 134 14734 2012
PubMed-ID: 22920569  |  Reference-DOI: 10.1021/JA306864V

(-) Compounds

Molecule 1 - INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 152-308
    Gene: MCL1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: BCL-2-RELATED PROTEIN EAT/MCL1
 
Molecule 2 - NOXA BH3 PEPTIDE (CYSTEINE-MEDIATED CROSS-LINKED)
    Chains: B
    Engineered: YES
    Other Details: SYNTHETIC CONSTRUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
14BP1Ligand/Ion4,4'-BIS(BROMOMETHYL)BIPHENYL
2ACE1Mod. Amino AcidACETYL GROUP
3DCY1Mod. Amino AcidD-CYSTEINE
4NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:171 , GLU A:188 , THR A:191 , ARG A:215 , ASP A:218 , GLY A:219 , HIS A:224 , MET A:231 , VAL A:249 , HIS A:252 , VAL A:253 , ASP A:256 , ASN A:260 , TRP A:261 , GLY A:262 , ARG A:263 , THR A:266 , LEU A:267 , PHE A:318 , PHE A:319 , VAL A:321 , GLN A:322 , HOH A:403 , HOH B:201BINDING SITE FOR LINKED RESIDUES B 1 to 22

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G35)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G35)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G35)

(-) Exons   (0, 0)

(no "Exon" information available for 4G35)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g35 A 171 EDDLYRQSLEIISRYLREQATGRRALETLRRVGDGVQRNHETAFQGMLRKKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ 322
                                   180       190||     214       224       234|      253       263       273       283       293       303       313         
                                              191|                         234|                                                                              
                                               206                          244                                                                              


Chain B from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4g35 B   1 xAAxLRRIGDCVNLRQKLLNx  21
                            |  |    10        20|
                            1-ACE              21-NH2
                               4-DCY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G35)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G35)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G35)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  MCL1_MOUSE | P97287
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCL1_MOUSE | P97287: 1wsx 2jm6 2nl9 2nla 2roc 2rod 3d7v 3io9 4bpi 4bpj 5ku9 5mes 5mev

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4G35)