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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEINACEOUS RNASE P 1 (PRORP1) FROM A. THALIANA, SEMET SUBSTITUTED FORM WITH SR
 
Authors :  M. Koutmos, M. J. Howard, C. A. Fierke
Date :  11 Jul 12  (Deposition) - 26 Sep 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Metallonuclease, Prorp, Ribonuclease, Pin, Trna Processing, Rnase P, Nyn Domain, Ppr Domain, Chloroplasts, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Howard, W. H. Lim, C. A. Fierke, M. Koutmos
Mitochondrial Ribonuclease P Structure Provides Insight Int The Evolution Of Catalytic Strategies For Precursor-Trna 5' Processing.
Proc. Natl. Acad. Sci. Usa V. 109 16149 2012
PubMed-ID: 22991464  |  Reference-DOI: 10.1073/PNAS.1209062109

(-) Compounds

Molecule 1 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN AT2G32230, MITOCHONDRIAL
    Chains: A
    EC Number: 3.1.26.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM-11
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 77-572
    Gene: AT2G32230, F22D22.2
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
2SR1Ligand/IonSTRONTIUM ION
3ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:344 , CYS A:347 , HIS A:548 , CYS A:565BINDING SITE FOR RESIDUE ZN A 1001
2AC2SOFTWAREASP A:475 , HOH A:1102 , HOH A:1116 , HOH A:1117 , HOH A:1118 , HOH A:1291BINDING SITE FOR RESIDUE SR A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G25)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Cys A:107 -Ser A:108
2Gly A:392 -Pro A:393

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G25)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G25)

(-) Exons   (0, 0)

(no "Exon" information available for 4G25)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.............eeeeee....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhh.....hhhhhhhhhhhhhhhh......eeeeehhhhh.....hhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh.eee......hhhhhh...hhhhhhhhhheeeeeee...eeeee.........ee.....eeee............eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g25 A  95 SPEALLKQKLDmCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQmIVDKVVPNEATFTNGARLAVAKDDPEmAFDmVKQmKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHmVESEVVPEEPELAALLKVSmDTKNADKVYKTLQRLRDLVRQVSKSTFDmIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEmDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANmGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEmRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNmPPPYSIVIQESEDGTWHVPmSVEDDLQTSRQWLCAKRSK 570
                                   104 |     114       124       134       144       154       164  |    174       184       194   |   204       214       224       234  |    244       254  |    264       274       284 |     294       304       314       324       334   |   344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494|      504       514       524      |534       544      |554       564      
                                     106-MSE                                                      167-MSE                    194-MSE   |                                237-MSE             257-MSE                      286-MSE                                             338-MSE                                                          403-MSE                                                                                     495-MSE                             531-MSE             551-MSE               
                                                                                                                                 198-MSE                                                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                     202-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G25)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G25)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G25)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRRP1_ARATH | Q66GI4: 4g23 4g24 4g26

(-) Related Entries Specified in the PDB File

4g23 4g24 4g26