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(-) Description

Title :  CRYSTAL STRUCTURE OF UREASE SUBUNIT GAMMA 2 FROM BRUCELLA MELITENSIS BIOVAR ABORTUS 2308
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  28 Jun 12  (Deposition) - 15 Aug 12  (Release) - 15 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Urease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Fairman, D. R. Davies, B. L. Staker, L. Stewart
Crystal Structure Of Urease Subunit Gamma 2 From Brucella Melitensis Biovar Abortus 2308
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UREASE SUBUNIT GAMMA 2
    Chains: A, B, C, D, E, F
    EC Number: 3.5.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UREA2, BAB1_1376
    Organism Scientific: BRUCELLA MELITENSIS BIOVAR ABORTUS
    Organism Taxid: 359391
    Strain: 2308
    Synonym: UREA AMIDOHYDROLASE SUBUNIT GAMMA 2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1CL13Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:14 , CL A:202 , ARG C:23BINDING SITE FOR RESIDUE CL A 201
02AC2SOFTWAREHIS A:14 , CL A:201BINDING SITE FOR RESIDUE CL A 202
03AC3SOFTWAREARG A:23 , HIS B:14BINDING SITE FOR RESIDUE CL A 203
04AC4SOFTWAREHIS B:14BINDING SITE FOR RESIDUE CL B 201
05AC5SOFTWAREARG B:23 , HIS C:14 , CL C:202BINDING SITE FOR RESIDUE CL C 201
06AC6SOFTWAREHIS C:14 , CL C:201 , HOH C:307BINDING SITE FOR RESIDUE CL C 202
07AC7SOFTWAREHIS D:14 , HOH D:371BINDING SITE FOR RESIDUE CL D 201
08AC8SOFTWAREHIS D:14 , HOH D:338 , ARG E:23BINDING SITE FOR RESIDUE CL D 202
09AC9SOFTWAREHIS E:14BINDING SITE FOR RESIDUE CL E 201
10BC1SOFTWARELEU E:95 , HIS E:96BINDING SITE FOR RESIDUE CL E 202
11BC2SOFTWAREHIS F:14 , HOH F:311BINDING SITE FOR RESIDUE CL F 201
12BC3SOFTWAREHIS E:14 , HOH E:323 , ARG F:23 , HOH F:307BINDING SITE FOR RESIDUE CL F 202
13BC4SOFTWAREARG D:23 , HOH D:361 , HIS F:14 , HOH F:302BINDING SITE FOR RESIDUE CL F 203
14BC5SOFTWARETHR F:52 , VAL F:53 , PHE F:86 , SER F:87 , ASP F:88BINDING SITE FOR RESIDUE EDO F 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FUR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FUR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FUR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FUR)

(-) Exons   (0, 0)

(no "Exon" information available for 4FUR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains d4fura_ A: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4fur A   1 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPIT 100
                                    10        20        30        40        50        60        70        80        90       100


Chain B from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains d4furb_ B: automated matches                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 4fur B   3 LTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPIT 100
                                    12        22        32        42        52        62        72        82        92        


Chain C from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains d4furc_ C: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh..hhhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4fur C   1 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPIT 100
                                    10        20        30        40        50        60        70        80        90       100


Chain D from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains d4furd_ D: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh...hhhhh..eeeeeee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4fur D   1 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPIT 100
                                    10        20        30        40        50        60        70        80        90       100


Chain E from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains d4fure_ E: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh...hhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4fur E   1 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPIT 100
                                    10        20        30        40        50        60        70        80        90       100


Chain F from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains d4furf_ F: automated matches                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhh...hhhhh.eeeeeeee..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4fur F   1 MHLTPREFDKLVIHMLSDVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDGSRLVSLHNPIT 100
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FUR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FUR)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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