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(-) Description

Title :  THE STRUCTURE OF A PUTATIVE SIGNAL-TRANSDUCTION PROTEIN WITH CBS DOMAINS FROM BURKHOLDERIA AMBIFARIA MC40-6
 
Authors :  Seattle Structural Genomics Center For Infectious Disease
Date :  26 Jun 12  (Deposition) - 11 Jul 12  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cbs Domain, Ssgcid, Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Putative Signal-Transduction Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
PubMed-ID: 23382856  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053851

(-) Compounds

Molecule 1 - PUTATIVE SIGNAL-TRANSDUCTION PROTEIN WITH CBS DOMAINS
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BAMMC406_4587
    Organism Scientific: BURKHOLDERIA AMBIFARIA
    Organism Taxid: 398577
    Strain: MC40-6

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:12 , THR A:18 , ILE A:19 , TYR A:20 , ILE A:40 , GLY A:41 , ALA A:42 , HIS A:107 , LEU A:119 , SER A:121 , ILE A:122 , GLY A:123 , ASP A:124 , LYS A:127 , HOH A:302 , HOH A:310 , HOH A:319 , ARG B:58 , MET B:100 , THR B:101 , ARG B:104 , MET B:105 , ARG B:106 , ILE B:122BINDING SITE FOR RESIDUE NAD A 201
2AC2SOFTWAREILE A:54 , THR A:56 , ARG A:58 , ASP A:59 , THR A:81 , LYS A:83 , VAL A:84 , ARG A:85 , MET A:105 , ARG A:106 , HIS A:107 , PRO A:109 , HOH A:308 , HOH A:311 , HOH A:315BINDING SITE FOR RESIDUE AMP A 202
3AC3SOFTWAREARG A:58 , MET A:100 , THR A:101 , ARG A:104 , MET A:105 , ARG A:106 , ILE A:122 , HOH A:313 , LYS B:12 , THR B:18 , ILE B:19 , TYR B:20 , GLY B:41 , ALA B:42 , LEU B:43 , HIS B:107 , LEU B:119 , SER B:121 , ILE B:122 , GLY B:123 , ASP B:124 , LYS B:127 , HOH B:301 , HOH B:313BINDING SITE FOR RESIDUE NAD B 201
4AC4SOFTWAREILE B:54 , THR B:56 , ARG B:58 , ASP B:59 , THR B:81 , LYS B:83 , VAL B:84 , ARG B:85 , MET B:105 , ARG B:106 , HIS B:107 , PRO B:109 , HOH B:305 , HOH B:307 , HOH B:324BINDING SITE FOR RESIDUE AMP B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FRY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp B:14 -Ser B:15

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FRY)

(-) Exons   (0, 0)

(no "Exon" information available for 4FRY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains d4frya_ A: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh........eee...hhhhhhhhhhhhh..eeeee....eeeeeehhhhhhhhhhhh......hhhhhh...........hhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fry A   3 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTIS 138
                                    12        22        32        42        52        62        72        82        92       102       112       122       132      


Chain B from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains d4fryb_ B: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh....ee....hhhhhhhhhhhhh..eeeee....eeeeeehhhhhhhhhhhh......hhhhh............hhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fry B   2 STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIADQQFTISQ 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FRY)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asp B:14 - Ser B:15   [ RasMol ]  
 

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