4FQT - JenaLib

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Title :   STRUCTURE OF AGAMOBP1 BOUND TO 6-METHYL-5-HEPTEN-2-ONE

Authors :   E. J. Murphy, J. C. Booth

Date :   25 Jun 12 (Deposition) - 02 Jan 13 (Release) - 20 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Odorant Binding Protein, Odorant-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. J. Murphy, J. C. Booth, F. Davrazou, A. M. Port, D. N. Jones
Interactions Of Anopheles Gambiae Odorant-Binding Proteins With A Human-Derived Repellent: Implications For The Mode O Action Of N, N-Diethyl-3-Methylbenzamide (Deet).
J. Biol. Chem. V. 288 4475 2013
PubMed-ID: 23261834 | Reference-DOI: 10.1074/JBC.M112.436386

Molecule 1 - ANOPHELES GAMBIAE ODORANT BINDING PROTEIN 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	AGAMOBP1, AGAP_AGAP003309, AGCG48275, OBP17, OBPJJ83B AGAP_AGAP010409
	Organism Common	:	AFRICAN MALARIA MOSQUITO
	Organism Scientific	:	ANOPHELES GAMBIAE
	Organism Taxid	:	180454
	Strain	:	PEST
	Synonym	:	ODORANT-BINDING PROTEIN AGAMOBP1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	0VT	2	Ligand/Ion	6-METHYLHEPT-5-EN-2-ONE
2	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	0VT	1	Ligand/Ion	6-METHYLHEPT-5-EN-2-ONE
2	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	0VT	1	Ligand/Ion	6-METHYLHEPT-5-EN-2-ONE
2	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:76 , ALA A:88 , LEU A:96	BINDING SITE FOR RESIDUE 0VT A 201
2	AC2	SOFTWARE	LEU A:19 , ALA A:62 , SER A:79 , TRP A:114 , HOH A:358 , HOH A:365	BINDING SITE FOR RESIDUE PG4 A 202
3	AC3	SOFTWARE	ALA B:62 , SER B:79 , HOH B:376	BINDING SITE FOR RESIDUE PG4 B 201
4	AC4	SOFTWARE	LEU B:76 , LEU B:80 , ALA B:88 , GLY B:92 , TRP B:114	BINDING SITE FOR RESIDUE 0VT B 202

Asymmetric Unit

No.	Residues
1	A:26	-	A:57
2	A:53	-	A:104
3	A:95	-	A:113
4	B:26	-	B:57
5	B:53	-	B:104
6	B:95	-	B:113

Asymmetric Unit

No.	Residues
1	Tyr A:10	-	Pro A:11
2	Tyr B:10	-	Pro B:11

(no "SAP(SNP)/Variant" information available for 4FQT)

(no "PROSITE Motif" information available for 4FQT)

(no "Exon" information available for 4FQT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains d4fqta_ A: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fqt A   1 DTTPRRDAEYPPPELLEALKPLHDICLGKTGVTEEAIKKFSDEEIHEDEKLKCYMNCLFHEAKVVDDNGDVHLEKLHDSLPSSMHDIAMHMGKRCLYPEGETLCDKAFWLHKCWKQSDPKHYFLV 125
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains d4fqtb_ B: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fqt B   1 DTTPRRDAEYPPPELLEALKPLHDICLGKTGVTEEAIKKFSDEEIHEDEKLKCYMNCLFHEAKVVDDNGDVHLEKLHDSLPSSMHDIAMHMGKRCLYPEGETLCDKAFWLHKCWKQSDPKHYFLV 125
                                    10        20        30        40        50        60        70        80        90       100       110       120

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Protein Domains( (-)

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Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: Insect pheromone/odorant-binding proteins (68)

Family: automated matches (18)

Protein domain: automated matches (18)

Anopheles gambiae [TaxId: 180454] (3)

1a	d4fqta_	A:
1b	d4fqtb_	B:

(no "CATH Domain" information available for 4FQT)

(no "Pfam Domain" information available for 4FQT)

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	Cis Peptide Bonds
		Tyr A:10 - Pro A:11	[ RasMol ]
		Tyr B:10 - Pro B:11	[ RasMol ]

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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (2, 4)

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SS Bonds (6, 6)

Cis Peptide Bonds (2, 2)

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