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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TCERG1 FF4-6 TANDEM REPEAT DOMAIN
 
Authors :  J. Liu, S. Fan, C. J. Lee, A. L. Greenleaf, P. Zhou
Date :  25 Jun 12  (Deposition) - 27 Feb 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ff Domain, Tandem Repeat Domain, Pctd-Binding Domain, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liu, S. Fan, C. J. Lee, A. L. Greenleaf, P. Zhou
Specific Interaction Of The Transcription Elongation Regulator Tcerg1 With Rna Polymerase Ii Requires Simultaneous Phosphorylation At Ser2, Ser5, And Ser7 Within The Carboxyl-Terminal Domain Repeat.
J. Biol. Chem. V. 288 10890 2013
PubMed-ID: 23436654  |  Reference-DOI: 10.1074/JBC.M113.460238

(-) Compounds

Molecule 1 - TRANSCRIPTION ELONGATION REGULATOR 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLASMID
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PET15B
    Fragment: TCERG1 FF4-6 TANDEM REPEAT DOMAIN (UNP RESIDUES 895:1081)
    Gene: TCERG1, CA150, TAF2S
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR 2S, TRANSCRIPTION FACTOR CA150

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2NI2Ligand/IonNICKEL (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NI-1Ligand/IonNICKEL (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1 , HIS A:2 , HIS A:38 , HOH A:390BINDING SITE FOR RESIDUE NI A 201
2AC2SOFTWARESER B:1 , HIS B:2 , HIS B:38 , HOH B:464 , HOH B:561BINDING SITE FOR RESIDUE NI B 201
3AC3SOFTWAREARG B:35BINDING SITE FOR RESIDUE CL B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FQG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FQG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FQG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FQG)

(-) Exons   (0, 0)

(no "Exon" information available for 4FQG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fqg A   1 SHMKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDD 186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fqg B   1 SHMKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKREHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKETKFITYRSKKLIQESDQHLKDVEKILQNDKRYLVLDCVPEERRKLIVAYVDDLDR 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FQG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FQG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FQG)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCRG1_HUMAN | O14776: 2dk7 2dod 2doe 2dof 2e71 2kiq 2kis 2mw9 2mwa 2mwb 2mwd 2mwe 2mwf 2n4r 2n4s 2n4t 2n4u 2n4v 2n4w 2nnt 3hfh 3q1i

(-) Related Entries Specified in the PDB File

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