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(-) Description

Title :  CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY C05 BOUND TO H3 INFLUENZA HEMAGGLUTININ, HA1 SUBUNIT
 
Authors :  D. C. Ekiert, I. A. Wilson
Date :  21 Jun 12  (Deposition) - 19 Sep 12  (Release) - 10 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D,H,I,J,K,L,M,N,O
Biol. Unit 1:  A,H,L  (1x)
Biol. Unit 2:  B,I,M  (1x)
Biol. Unit 3:  C,J,N  (1x)
Biol. Unit 4:  D,K,O  (1x)
Keywords :  Viral Fusion Protein, Immunoglobulin, Virus Attachment And Entry, Immune Recognition, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Ekiert, A. K. Kashyap, J. Steel, A. Rubrum, G. Bhabha, R. Khayat, J. H. Lee, M. A. Dillon, R. E. O'Neil, A. M. Faynboym, M. Horowitz, L. Horowitz, A. B. Ward, P. Palese, R. Webby, R. A. Lerner, R. R. Bhatt, I. A. Wilson
Cross-Neutralization Of Influenza A Viruses Mediated By A Single Antibody Loop.
Nature V. 489 526 2012
PubMed-ID: 22982990  |  Reference-DOI: 10.1038/NATURE11414

(-) Compounds

Molecule 1 - HEMAGGLUTININ HA1 CHAIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Strain: HIGH FIVE
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 59-325
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 506350
    Strain: A/HONG KONG/1/1968 H3N2
    Synonym: HEMAGGLUTININ RECEPTOR BINDING SUBUNIT HA1
 
Molecule 2 - ANTIBODY C05, HEAVY CHAIN
    Chains: H, I, J, K
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Strain: HEK 293 FREESTYLE
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: FAB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - ANTIBODY C05, LIGHT CHAIN
    Chains: L, M, N, O
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Strain: HEK 293 FREESTYLE
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDHIJKLMNO
Biological Unit 1 (1x): A   H   L   
Biological Unit 2 (1x):  B   I   M  
Biological Unit 3 (1x):   C   J   N 
Biological Unit 4 (1x):    D   K   O

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PCA4Mod. Amino AcidPYROGLUTAMIC ACID
3ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID
3ZN-1Ligand/IonZINC ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID
3ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:165BINDING SITE FOR RESIDUE NAG A 701
02AC2SOFTWAREASN C:165 , NAG C:702BINDING SITE FOR RESIDUE NAG C 701
03AC3SOFTWARENAG C:701BINDING SITE FOR RESIDUE NAG C 702
04AC4SOFTWAREASN D:165BINDING SITE FOR RESIDUE NAG D 701
05AC5SOFTWAREASP H:61 , ASP L:1BINDING SITE FOR RESIDUE ZN H 301
06AC6SOFTWAREHIS H:164 , ASN L:137 , ASN L:138BINDING SITE FOR RESIDUE ZN L 301
07AC7SOFTWAREASP B:104 , ASP L:151 , HIS L:189BINDING SITE FOR RESIDUE ZN L 302
08AC8SOFTWAREHIS I:164 , ASN M:137 , ASN M:138BINDING SITE FOR RESIDUE ZN M 301
09AC9SOFTWAREASP J:61 , ASP N:1BINDING SITE FOR RESIDUE ZN J 301
10BC1SOFTWAREASP N:92BINDING SITE FOR RESIDUE ZN N 301
11BC2SOFTWAREHIS J:164 , ASN N:137 , ASN N:138BINDING SITE FOR RESIDUE ZN N 302
12BC3SOFTWAREASP O:92BINDING SITE FOR RESIDUE ZN O 301

(-) SS Bonds  (32, 32)

Asymmetric Unit
No.Residues
1A:52 -A:277
2A:64 -A:76
3A:97 -A:139
4A:281 -A:305
5B:52 -B:277
6B:64 -B:76
7B:97 -B:139
8B:281 -B:305
9C:52 -C:277
10C:64 -C:76
11C:97 -C:139
12C:281 -C:305
13D:52 -D:277
14D:64 -D:76
15D:97 -D:139
16D:281 -D:305
17H:22 -H:92
18H:140 -H:196
19I:22 -I:92
20I:140 -I:196
21J:22 -J:92
22J:140 -J:196
23K:22 -K:92
24K:140 -K:196
25L:23 -L:88
26L:134 -L:194
27M:23 -M:88
28M:134 -M:194
29N:23 -N:88
30N:134 -N:194
31O:23 -O:88
32O:134 -O:194

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Asn A:54 -Pro A:55
2Asn B:54 -Pro B:55
3Asn C:54 -Pro C:55
4Asn D:54 -Pro D:55
5Phe H:146 -Pro H:147
6Glu H:148 -Pro H:149
7Ser L:7 -Pro L:8
8Leu L:94 -Pro L:95
9Tyr L:140 -Pro L:141
10Phe I:146 -Pro I:147
11Glu I:148 -Pro I:149
12Ser M:7 -Pro M:8
13Leu M:94 -Pro M:95
14Tyr M:140 -Pro M:141
15Phe J:146 -Pro J:147
16Glu J:148 -Pro J:149
17Ser N:7 -Pro N:8
18Leu N:94 -Pro N:95
19Tyr N:140 -Pro N:141
20Phe K:146 -Pro K:147
21Glu K:148 -Pro K:149
22Ser O:7 -Pro O:8
23Leu O:94 -Pro O:95
24Tyr O:140 -Pro O:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FP8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FP8)

(-) Exons   (0, 0)

(no "Exon" information available for 4FP8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                            
               SCOP domains d4fp8a_ A: Hemagglutinin                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......eeeee.eeeeee..eee....eeeeee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeee......eeee....eeeee..eee..eee.....ee......ee...ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 A   43 VQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYV  309
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       


Chain B from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                            
               SCOP domains d4fp8b_ B: Hemagglutinin                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeee......eeee....eeeee..eee..eee.....ee......ee...ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 B   43 VQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYV  309
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       


Chain C from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                          
               SCOP domains d4fp8c_ C: Hemagglutinin                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh....eeeee....eeee...............eeeeeeeee....eeeeeeee.eeee.eeee......eeee....eeeee..eee..eee.............ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 C   44 QSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKY  308
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303     


Chain D from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                           
               SCOP domains d4fp8d_ D: Hemagglutinin                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......eeeee.eeeeee..eee....eeeeee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee...eeeee...............eeeeeeeee....eeeeee...eeee.eeee......eeee....eeeee..eee..eee.....ee......ee...ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 D   44 QSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGVHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINSNGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYV  309
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303      


Chain H from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..hhhhhhhh.eeeeeeee.....eeeeeee.......ee.......eeeeeehhh.eeeeee...hhhhheeeeeeeeeee.eehhhhee........eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 H    1 xVQLQESGGGLVQPGESLRLSCVGSGSSFGESTLSYYAVSWVRQAPGKGLEWLSIINAGGGDIDYADSVEGRFTISRDNSKETLYLQMTNLRVEDTGVYYCAKHMSMQQVVSAGWERADLVGDAFDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                            |       10        20       27C||      35        45       |54        64        74       82B|       91      100A||||||100K|||||  105       115       125       135       145       155       165       175       185       195       205         
                            1-PCA                    27A||||                       52A                            82A||               100A|||||100J||||||                                                                                                                  
                                                      27B|||                                                       82B|                100B|||||100K|||||                                                                                                                  
                                                       27C||                                                        82C                 100C|||||100L||||                                                                                                                  
                                                        27D|                                                                             100D|||||100M|||                                                                                                                  
                                                         27E                                                                              100E|||| 100N||                                                                                                                  
                                                                                                                                           100F|||  100O|                                                                                                                  
                                                                                                                                            100G||   100P                                                                                                                  
                                                                                                                                             100H|                                                                                                                         
                                                                                                                                              100I                                                                                                                         


Chain I from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...ee.....eeeeeeeee.hhhhhhhh.eeeeeeee.....eeeeeee.......ee.......eeeeeehhh.eeeeee...hhhhheeeeeeeeeee.eehhhhee........eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh..eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 I    1 xVQLQESGGGLVQPGESLRLSCVGSGSSFGESTLSYYAVSWVRQAPGKGLEWLSIINAGGGDIDYADSVEGRFTISRDNSKETLYLQMTNLRVEDTGVYYCAKHMSMQQVVSAGWERADLVGDAFDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                            |       10        20       27C||      35        45       |54        64        74       82B|       91      100A||||||100K|||||  105       115       125       135       145       155       165       175       185       195       205         
                            1-PCA                    27A||||                       52A                            82A||               100A|||||100J||||||                                                                                                                  
                                                      27B|||                                                       82B|                100B|||||100K|||||                                                                                                                  
                                                       27C||                                                        82C                 100C|||||100L||||                                                                                                                  
                                                        27D|                                                                             100D|||||100M|||                                                                                                                  
                                                         27E                                                                              100E|||| 100N||                                                                                                                  
                                                                                                                                           100F|||  100O|                                                                                                                  
                                                                                                                                            100G||   100P                                                                                                                  
                                                                                                                                             100H|                                                                                                                         
                                                                                                                                              100I                                                                                                                         


Chain J from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...ee.....eeeeeeeee.hhhhhhhh.eeeeeeee......eeeeee.......ee.......eeeeeehhh.eeeeee...hhhhheeeeeeeeeee.eehhhhee........eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhhhhh.eeeeeeehhhheeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 J    1 xVQLQESGGGLVQPGESLRLSCVGSGSSFGESTLSYYAVSWVRQAPGKGLEWLSIINAGGGDIDYADSVEGRFTISRDNSKETLYLQMTNLRVEDTGVYYCAKHMSMQQVVSAGWERADLVGDAFDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                            |       10        20       27C||      35        45       |54        64        74       82B|       91      100A||||||100K|||||  105       115       125       135       145       155       165       175       185       195       205         
                            1-PCA                    27A||||                       52A                            82A||               100A|||||100J||||||                                                                                                                  
                                                      27B|||                                                       82B|                100B|||||100K|||||                                                                                                                  
                                                       27C||                                                        82C                 100C|||||100L||||                                                                                                                  
                                                        27D|                                                                             100D|||||100M|||                                                                                                                  
                                                         27E                                                                              100E|||| 100N||                                                                                                                  
                                                                                                                                           100F|||  100O|                                                                                                                  
                                                                                                                                            100G||   100P                                                                                                                  
                                                                                                                                             100H|                                                                                                                         
                                                                                                                                              100I                                                                                                                         


Chain K from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...ee.....eeeeeeeee.hhhhhhhh.eeeeeeee......eeeeee.......ee.......eeeeeehhh.eeeeee...hhhhheeeeeeeeeee.eehhhhee........eeee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee..hhhhh.eeeeeeehhhheeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 K    1 xVQLQESGGGLVQPGESLRLSCVGSGSSFGESTLSYYAVSWVRQAPGKGLEWLSIINAGGGDIDYADSVEGRFTISRDNSKETLYLQMTNLRVEDTGVYYCAKHMSMQQVVSAGWERADLVGDAFDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                            |       10        20       27C||      35        45       |54        64        74       82B|       91      100A||||||100K|||||  105       115       125       135       145       155       165       175       185       195       205         
                            1-PCA                    27A||||                       52A                            82A||               100A|||||100J||||||                                                                                                                  
                                                      27B|||                                                       82B|                100B|||||100K|||||                                                                                                                  
                                                       27C||                                                        82C                 100C|||||100L||||                                                                                                                  
                                                        27D|                                                                             100D|||||100M|||                                                                                                                  
                                                         27E                                                                              100E|||| 100N||                                                                                                                  
                                                                                                                                           100F|||  100O|                                                                                                                  
                                                                                                                                            100G||   100P                                                                                                                  
                                                                                                                                             100H|                                                                                                                         
                                                                                                                                              100I                                                                                                                         


Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d4fp8l1 L:1-106 automated matches                                                                         d4fp8l2 L:107-213 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 L    1 DIQLTQSPSSLSASVGDRVTLTCQASQDIRKFLNWYQQKPGKGPKLLIYDASNLQRGVPSRFSGGGSGTDFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVVIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain M from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d4fp8m1 M:1-106 automated matches                                                                         d4fp8m2 M:107-213 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 M    1 DIQLTQSPSSLSASVGDRVTLTCQASQDIRKFLNWYQQKPGKGPKLLIYDASNLQRGVPSRFSGGGSGTDFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVVIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain N from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d4fp8n1 N:1-106 automated matches                                                                         d4fp8n2 N:107-213 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 N    1 DIQLTQSPSSLSASVGDRVTLTCQASQDIRKFLNWYQQKPGKGPKLLIYDASNLQRGVPSRFSGGGSGTDFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVVIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   


Chain O from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                      
               SCOP domains d4fp8o1 O:1-106 automated matches                                                                         d4fp8o2 O:107-213 automated matches                                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fp8 O    1 DIQLTQSPSSLSASVGDRVTLTCQASQDIRKFLNWYQQKPGKGPKLLIYDASNLQRGVPSRFSGGGSGTDFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVVIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE  213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
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(-) SCOP Domains  (3, 12)

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Class: All beta proteins (24004)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        HEMA_I68A4 | Q91MA7: 3sdy 3ztj 4fnk 4fqr 4fqy 4nm8 4ubd 4we4 4zcj 5k9k 5k9q 5kan 5kuy 5t6n 5thf 5umn 5vtq 5vtr 5vtu 5vtv 5vtw 5vtx 5vty 5vtz 5vu4

(-) Related Entries Specified in the PDB File

4fnk
4fnl
4fqr RELATED ID: EMD-2138 RELATED DB: EMDB RELATED ID: EMD-2139 RELATED DB: EMDB RELATED ID: EMD-2140 RELATED DB: EMDB