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(-) Description

Title :  CRYSTAL STRUCTURE OF LINCOSAMIDE ANTIBIOTIC ADENYLYLTRANSFERASE LNUA, APO
 
Authors :  P. J. Stogios, Z. Wawrzak, G. Minasov, E. Evdokimova, O. Egorova, M Kud V. Yim, P. Courvalin, A. Savchenko, W. F. Anderson, Center For Struc Genomics Of Infectious Diseases (Csgid)
Date :  20 Jun 12  (Deposition) - 04 Jul 12  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Antibiotic Resistance, Center For Structural Genomics Of Infectious Diseases (Csgid), Niaid, National Institute Of Allergy And Infectious Diseases, Alpha+Beta Structure, Aminoglycoside-2''-Adenylyltransferase Superfamily, Nucleotidyltransferase Superfamily, Transferase, Lincosamide Adenylyltransferase, Lincosamide Antibiotics, Lincomycin, Clindamycin, Adenosine Triphosphate, Intracellular (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios, Z. Wawrzak, G. Minasov, E. Evdokimova, O. Egorova, M Kudritska, V. Yim, P. Courvalin, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Lincosamide Antibiotic Adenylyltransferase Lnua, Apo
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LINCOSAMIDE RESISTANCE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: LNUA
    Gene: LINA
    Organism Scientific: STAPHYLOCOCCUS HAEMOLYTICUS
    Organism Taxid: 1283

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1EPE4Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:28 , GLY A:29 , ASP A:48 , ASP A:50 , HIS A:92 , GLN A:104 , PHE A:114 , PHE A:140 , HOH A:354 , HOH A:402 , TYR B:144BINDING SITE FOR RESIDUE EPE A 201
2AC2SOFTWAREMSE A:21 , LYS A:58 , LYS A:62 , ASP B:98BINDING SITE FOR RESIDUE EPE A 202
3AC3SOFTWARETYR A:144 , ASP B:28 , GLY B:29 , ASP B:48 , ASP B:50 , HIS B:92 , GLN B:104 , PHE B:119 , PHE B:140 , HOH B:375BINDING SITE FOR RESIDUE EPE B 201
4AC4SOFTWAREGLN B:40 , HOH B:360 , HOH B:416BINDING SITE FOR RESIDUE EPE B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FO1)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Mse A:75 -Pro A:76
2Mse B:75 -Pro B:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FO1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FO1)

(-) Exons   (0, 0)

(no "Exon" information available for 4FO1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh...eeeehhhhhhhhhh.......eeeeeee..hhhhhhhhhhhh..eeeee.....eeeee...eeeeeeeeee.....eeee.....eeeehhh.eeeeee..eeeeeehhhhhhhhh.....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fo1 A   4 NNVTEKELFYILDLFEHmKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLEDIGYKIEVHWmPSRmELKHEEYGYLDIHPINLNDDGSITQANPEGGNYVFQNDWFSETNYKDRKIPCISKEAQLLFHSGYDLTETDHFDIKNLKSIT 161
                                    13       |23        33        43        53        63        73 |   |  83        93       103       113       123       133       143       153        
                                            21-MSE                                                75-MSE                                                                                  
                                                                                                      79-MSE                                                                              


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh...eeeehhhhhhhhhh.......eeeeeee..hhhhhhhhhhhh..eeeee.....eeeee...eeeeeeeeee.....eeeee..eeeeeehhh.eeeee....eeeeehhhhhhhhh.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fo1 B   4 NNVTEKELFYILDLFEHmKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLEDIGYKIEVHWmPSRmELKHEEYGYLDIHPINLNDDGSITQANPEGGNYVFQNDWFSETNYKDRKIPCISKEAQLLFHSGYDLTETDHFDIKNLKSIT 161
                                    13       |23        33        43        53        63        73 |   |  83        93       103       113       123       133       143       153        
                                            21-MSE                                                75-MSE                                                                                  
                                                                                                      79-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FO1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FO1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FO1)

(-) Gene Ontology  (1, 1)

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 Related Entries

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        LINA_STAHA | P06107: 4wh5

(-) Related Entries Specified in the PDB File

4e8j CRYSTAL STRUCTURE OF LINCOSAMIDE ANTIBIOTIC ADENYLYLTRANSFERASE LINA, LINCOMYCIN-BOUND RELATED ID: CSGID-IDP91779 RELATED DB: TARGETTRACK