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(-) Description

Title :  HUMAN ACTIN-RELATED PROTEIN ARP8 IN ITS ATP-BOUND STATE
 
Authors :  C. B. Gerhold, K. Lakomek, F. U. Seifert, K. -P. Hopfner
Date :  20 Jun 12  (Deposition) - 26 Sep 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Actin-Related Protein, Chromatin Remodeling, Nucleosomes, Nucleus, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. B. Gerhold, D. D. Winkler, K. Lakomek, F. U. Seifert, S. Fenn, B. Kessler, G. Witte, K. Luger, K. P. Hopfner
Structure Of Actin-Related Protein 8 And Its Contribution T Nucleosome Binding.
Nucleic Acids Res. V. 40 11036 2012
PubMed-ID: 22977180  |  Reference-DOI: 10.1093/NAR/GKS842

(-) Compounds

Molecule 1 - ACTIN-RELATED PROTEIN 8
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-28
    Expression System StrainROSETTA 2 (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHARP8, INO80 COMPLEX SUBUNIT N

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CL1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL
4MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 18)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3GOL16Ligand/IonGLYCEROL
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:288 , ATP A:702 , HOH A:844 , HOH A:901 , HOH A:905 , HOH A:907BINDING SITE FOR RESIDUE MG A 701
02AC2SOFTWAREGLY A:54 , SER A:55 , THR A:56 , THR A:57 , ARG A:59 , GLY A:285 , ASP A:286 , GLN A:287 , LYS A:288 , GLY A:311 , GLN A:344 , LYS A:347 , GLU A:348 , GLY A:539 , GLY A:540 , GLY A:541 , MET A:543 , PHE A:544 , MG A:701 , HOH A:809 , HOH A:813 , HOH A:814 , HOH A:815 , HOH A:844 , HOH A:845 , HOH A:901 , HOH A:930BINDING SITE FOR RESIDUE ATP A 702
03AC3SOFTWAREGLN A:105 , PRO A:395 , ALA A:396 , PHE A:398 , GLY A:399 , ILE A:400 , MET A:405 , ALA A:508BINDING SITE FOR RESIDUE GOL A 703
04AC4SOFTWAREGLY A:153 , ASN A:154 , LYS A:155 , TYR A:173 , HOH A:823 , HOH A:940BINDING SITE FOR RESIDUE GOL A 704
05AC5SOFTWAREGLN A:107 , LEU A:110 , LYS A:111 , ASP A:114 , ASP A:149 , HIS A:150 , HOH A:871BINDING SITE FOR RESIDUE GOL A 705
06AC6SOFTWARETYR A:329 , GLU A:331 , GLN A:333 , ASP A:339 , HOH A:939BINDING SITE FOR RESIDUE GOL A 706
07AC7SOFTWAREPHE A:350 , HIS A:363 , LYS A:385BINDING SITE FOR RESIDUE GOL A 707
08AC8SOFTWARETRP A:156 , THR A:157 , ASN A:158 , THR A:159 , SER A:160 , ASN A:175 , ASP A:178 , HOH A:919BINDING SITE FOR RESIDUE GOL A 708
09AC9SOFTWAREPRO A:176 , THR A:335 , ASN A:336 , LYS A:337 , MET A:338 , HOH A:842 , HOH A:929BINDING SITE FOR RESIDUE GOL A 709
10BC1SOFTWAREGLN A:44 , SER A:45 , ALA A:593 , CYS A:594BINDING SITE FOR RESIDUE GOL A 710
11BC2SOFTWAREMET A:579 , ASP A:580 , LYS A:587BINDING SITE FOR RESIDUE CL A 711

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FO0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FO0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FO0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FO0)

(-) Exons   (0, 0)

(no "Exon" information available for 4FO0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:502
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeee..eeeeee....eeeeee..eeeee......eeeeee.........hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh.eeeeeee..............eeeehhhhhh......eeeee................hhhhhhhhhhhhhhhhhhh....hhhhhh.eeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhhhhhh...eeeeeee....eeeeeee........eeee..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.........eeeeeee......eeeeeeee.hhhhhhhhhhh............eeee..hhhhh...hhhhhhhhhhh...hhhhhhhhheeeee........hhhhhhhhhhhhh.hhhhhhh..eeeee........hhhhhhhhhhhh.hhhhhh...hhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fo0 A  32 GPLVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHSLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAAFVW 624
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       502       512       522       532       542       552       562       572       582       592       602       612       622  
                                                                                                                                                                                                                                                                                                                                                                                                                    410|                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                                     502                                                                                                                          

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FO0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FO0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FO0)

(-) Gene Ontology  (15, 15)

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(-) Related Entries Specified in the PDB File

3qb0 CRYSTAL STRUCTURE OF ACTIN-RELATED PROTEIN ARP4 FROM S. CEREVISIAE COMPLEXED WITH ATP