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(-) Description

Title :  STRUCTURAL CHARACTERIZATION OF THIAMINASE TYPE II TENA FROM STAPHYLOCOCCUS AUREUS
 
Authors :  A. Begum, J. Drebes, M. Perbandt, C. Wrenger, C. Betzel
Date :  19 Jun 12  (Deposition) - 19 Dec 12  (Release) - 19 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Alpha-Helix, Thiaminase, Vitamin B1, Bi-Functional Enzyme, Cleavage Of Thiamine Into Hmp And Thz, Deamination Of Amino-Pyrimidine To Hmp In S. Aureus, Hydrolase, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Begum, J. Drebes, M. Perbandt, C. Wrenger, C. Betzel
Structural Characterization Of Thiaminase Type Ii Tena From Staphylococcus Aureus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THIAMINASE-2
    Chains: A, B, C, D
    EC Number: 3.5.99.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BLR (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TENA, SAR2183
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 282458
    Strain: MRSA252
    Synonym: THIAMINASE II

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1ACT9Ligand/IonACETATE ION
2CME4Mod. Amino AcidS,S-(2-HYDROXYETHYL)THIOCYSTEINE
3GOL4Ligand/IonGLYCEROL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:190 , ASP A:191 , HOH A:431 , SER C:188 , MET C:189BINDING SITE FOR RESIDUE ACT A 301
02AC2SOFTWAREASP A:44 , TYR A:47 , CME A:137 , GLU A:208BINDING SITE FOR RESIDUE ACT A 302
03AC3SOFTWAREASP A:21 , ASP A:22 , ASN A:213 , HOH A:423BINDING SITE FOR RESIDUE GOL A 303
04AC4SOFTWARELYS B:6 , GLN B:9 , ALA B:10 , LYS B:198BINDING SITE FOR RESIDUE ACT B 301
05AC5SOFTWAREASP B:21BINDING SITE FOR RESIDUE ACT B 302
06AC6SOFTWAREHIS B:122 , SER B:123 , GLU B:125 , LYS C:61 , ALA C:121 , HIS C:122 , ARG C:124BINDING SITE FOR RESIDUE GOL B 303
07AC7SOFTWAREASP C:44 , PHE C:51 , TYR C:113 , CME C:137 , TYR C:141 , GLU C:208BINDING SITE FOR RESIDUE GOL C 301
08AC8SOFTWARETRP C:106BINDING SITE FOR RESIDUE GOL C 302
09AC9SOFTWARESER B:190 , SER C:188BINDING SITE FOR RESIDUE ACT C 303
10BC1SOFTWAREMET C:78 , CME C:137BINDING SITE FOR RESIDUE ACT C 304
11BC2SOFTWAREASP D:44 , PHE D:51 , CME D:137 , TYR D:141 , GLU D:208BINDING SITE FOR RESIDUE ACT D 301
12BC3SOFTWAREGLU D:157BINDING SITE FOR RESIDUE ACT D 302
13BC4SOFTWAREHIS A:122 , SER A:123 , SER D:123BINDING SITE FOR RESIDUE ACT D 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FN6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Cme D:137 -Pro D:138

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FN6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FN6)

(-) Exons   (0, 0)

(no "Exon" information available for 4FN6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4fn6a_ A: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn6 A   1 MEFSQKLYQAAKPIINDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPcPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTLEQWEFGG 225
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220     
                                                                                                                                                                  137-CME                                                                                    


Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4fn6b_ B: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn6 B   1 MEFSQKLYQAAKPIINDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPcPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTLEQWEFGG 225
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220     
                                                                                                                                                                  137-CME                                                                                    


Chain C from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains d4fn6c_ C: automated matches                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn6 C   1 MEFSQKLYQAAKPIINDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPcPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTLEQWEFG 224
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220    
                                                                                                                                                                  137-CME                                                                                   


Chain D from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4fn6d_ D: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fn6 D   1 MEFSQKLYQAAKPIINDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIAAMAPcPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTLEQWEFGG 225
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |140       150       160       170       180       190       200       210       220     
                                                                                                                                                                  137-CME
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FN6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FN6)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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