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(-) Description

Title :  CRYSTAL STRUCTURE OF THE E493V MUTANT OF HUMAN APOPTOSIS INDUCING FACTOR (AIF)
 
Authors :  I. F. Sevrioukova
Date :  27 May 12  (Deposition) - 17 Oct 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  B
Keywords :  Rossmann Fold, Mitochondrion, Appoptosis, Oxidoreductase, Apoptosis, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Rinaldi, C. Grunseich, I. F. Sevrioukova, A. Schindler, I. Horkayne-Szakaly, C. Lamperti, G. Landoure, M. L. Kennerson, B. G. Burnett, C. Bonnemann, L. G. Biesecker, D. Ghezzi, M. Zeviani, K. H. Fischbeck
Cowchock Syndrome Is Associated With A Mutation In Apoptosis-Inducing Factor.
Am. J. Hum. Genet. V. 91 1095 2012
PubMed-ID: 23217327  |  Reference-DOI: 10.1016/J.AJHG.2012.10.008

(-) Compounds

Molecule 1 - APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL
    ChainsB
    EC Number1.-.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPKK
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 103-613
    GeneAIF, AIFM1, PDCD8
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROGRAMMED CELL DEATH PROTEIN 8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:138 , GLY B:139 , GLY B:140 , THR B:141 , ALA B:142 , VAL B:162 , GLU B:164 , ARG B:172 , PRO B:173 , SER B:176 , LYS B:177 , LYS B:232 , VAL B:233 , ALA B:259 , THR B:260 , GLY B:261 , ARG B:285 , LEU B:311 , GLY B:437 , ASP B:438 , GLU B:453 , HIS B:454 , HIS B:455 , PHE B:482 , TRP B:483BINDING SITE FOR RESIDUE FAD B 1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FDC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly B:471 -Ala B:472

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FDC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FDC)

(-) Exons   (0, 0)

(no "Exon" information available for 4FDC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain B from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh....hhhhhheee.....eee....hhhhh............eeeeee...eeeee....eeee....eeeeeeeee...eee..hhhhhh.hhhhhh.eee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh..eee....eeeeee....eeeee....eeee.eeee...eee.hhhhh............ee.....eee..eee....eeeee...eeee..hhhhhhhhhhhhhhhhh...........eeee.....eeeeee.......eeeeee......hhhhhhhhhh..hhhhhh......eeeeeeee..eeeeeeee....hhhhhhhhhhhh.....hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fdc B 128 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYVAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLNEVAKLFNI 610
                                   137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537|      569       579       589       599       609 
                                                                                                                                                                                                                                                                                                                                                                                                                                                   537|                                                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                    560                                                  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FDC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FDC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FDC)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AIFM1_HUMAN | O958311m6i 4bur 4bv6 4lii 5fmh 5fs6 5fs7 5fs8 5fs9 5kvh 5kvi

(-) Related Entries Specified in the PDB File

1m6i WILD TYPE HUMAN AIF