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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACTERIOPHAGE MU TRANSPOSOSOME
 
Authors :  S. P. Montano, Y. Z. Pigli, P. A. Rice
Date :  25 May 12  (Deposition) - 07 Nov 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.71
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (2x)
Biol. Unit 2:  A,B,C,D,E  (4x)
Keywords :  Rnaseh, Dde Transposase, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. P. Montano, Y. Z. Pigli, P. A. Rice
The Mu Transpososome Structure Sheds Light On Dde Recombinase Evolution.
Nature V. 491 413 2012
PubMed-ID: 23135398  |  Reference-DOI: 10.1038/NATURE11602

(-) Compounds

Molecule 1 - TRANSPOSASE
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 77-605
    GeneA, 3
    MutationYES
    Organism ScientificENTEROBACTERIA PHAGE MU
    Organism Taxid10677
 
Molecule 2 - DNA (68-MER)
    ChainsC
    EngineeredYES
    Organism ScientificENTEROBACTERIA PHAGE MU
    Organism Taxid10677
    SyntheticYES
 
Molecule 3 - DNA (13-MER)
    ChainsE
    EngineeredYES
    Organism ScientificENTEROBACTERIA PHAGE MU
    Organism Taxid10677
    SyntheticYES
 
Molecule 4 - DNA (49-MER)
    ChainsD
    EngineeredYES
    Organism ScientificENTEROBACTERIA PHAGE MU
    Organism Taxid10677
    SyntheticYES

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit ABCDE
Biological Unit 1 (2x)ABCDE
Biological Unit 2 (4x)ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4FCY)

(-) Sites  (0, 0)

(no "Site" information available for 4FCY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FCY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:358 -Lys A:359

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FCY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FCY)

(-) Exons   (0, 0)

(no "Exon" information available for 4FCY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeee....ee.....ee..eeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhhee..eeee...................hhhhhhhhh.eeee........hhhhh..........hhhhhhhhheehhhhhhhhhhhhhhhhhh............hhhhhhhhhhh...ee..hhhhhhhh..eeeeee.....eeeeee......eeeeee.hhhhhh...eeeee.hhhhh..eeeee.....eeeeeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fcy A  88 DREALWSKWDNASDSQRRLAEKWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITIDNTTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWLEEYVDKHPALAGAYTGPNPQAKPDNYGDRAVDAELFLKTLAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNLALMLAGVKKVVVRFDPQQLHSTVYCYTLDGRFICEAECLREYRRRQKQLKSATKAAIKAQKQ 594
                                    97       107       117       127       137       147       157       179       189       199       209       219       229       239       259       269       279       289       299       309       319       329       347       357       367       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560|      581       591   
                                                                                                       165|                                                                  247|                                                                             338|                          376|                                                                                                                                                             560|                      
                                                                                                        178                                                                   258                                                                              347                           400                                                                                                                                                              572                      

Chain B from PDB  Type:PROTEIN  Length:476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh........eeeeeeee....ee.....ee..eeeeeee.....eeeeeee...hhhhhhhhhhhhhhhhhee..eeee...........................hhhhhhhhhheeee................hhhhhhhhhh.....hhhhh...........eehhhhhhhhhhhhhhhhhh............hhhhhhhhhhh...ee..hhhhhhhh.eeeeeee.....eeeeee......eeeeee.hhhhhh...eeeeeehhhhh..eeeee.....eeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fcy B  88 DREALWSKWDNASDSQRRLAEKWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPYGDRAVDAELFLKTLAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNLALMLAGVKKVVVRFDPQQLHSTVYCYTLDGRFICEAECLAAAGREYRRRQKQLKSATKAAIKAQKQMDALEVAELLP 605
                                    97       107       117       127       137       147       157       179       189       199       209       219       229       239  ||   264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414  ||   432       442       452       462       472       482       492       502       512       522       532       542       552       569       579       589       599      
                                                                                                       165|                                                             242|                                                                                                                                                            417|                                                                                                                                   560|                                     
                                                                                                        178                                                              258                                                                                                                                                             426                                                                                                                                    568                                     

Chain C from PDB  Type:DNA  Length:68
                                                                                                    
                 4fcy C   2 GTTTTCGCATTTATCGTGAAACGCTTTCGCGTTTTTCGTGCGCCGCTTCATCTGATGTGTTGTTGACG  69
                                    11        21        31        41        51        61        

Chain D from PDB  Type:DNA  Length:49
                                                                                 
                 4fcy D   6 GAAGCGGCGCACGAAAAACGCGAAAGCGTTTCACGATAAATGCGAAAAC  54
                                    15        25        35        45         

Chain E from PDB  Type:DNA  Length:13
                                             
                 4fcy E   2 CGTCAACAACACA  14
                                    11   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FCY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FCY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FCY)

(-) Gene Ontology  (18, 18)

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    Val A:358 - Lys A:359   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNPA_BPMU | P076361bcm 1bco 1tns 1tnt 2ezh 2ezi 2ezk 2ezl

(-) Related Entries Specified in the PDB File

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