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(-) Description

Title :  CRYSTAL STRUCTURE OF YERSINIA PESTIS GLMU IN COMPLEX WITH ALPHA-D-GLUCOSAMINE 1-PHOSPHATE (GP1)
 
Authors :  B. Nocek, M. Kuhn, M. Gu, W. F. Anderson, A. Joachimiak, Center For Str Genomics Of Infectious Diseases (Csgid)
Date :  24 May 12  (Deposition) - 11 Jul 12  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Glmu. Csgid, Niaid, Structural Genomics, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Glmu, Gp1, Alpha-D-Glucosamine 1-Phosphate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, M. Kuhn, W. F. Anderson, A. Joachimiak
Crystal Structure Of Yersinia Pestis Glmu In Complex With Alpha-D-Glucosamine 1-Phosphate (Gp1)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BIFUNCTIONAL PROTEIN GLMU
    Chains: A
    EC Number: 2.7.7.23, 2.3.1.157
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21DE3
    Expression System Taxid: 562
    Expression System Vector Type: PMCSG19C
    Gene: GLMU, YPTB3965
    Organism Scientific: YERSINIA PESTIS CO92
    Organism Taxid: 214092
    Strain: CO92
    Synonym: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE, N- ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLUCOSAMINE-1- PHOSPHATE N-ACETYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2GP11Ligand/IonGLUCOSAMINE 1-PHOSPHATE
3MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2GP13Ligand/IonGLUCOSAMINE 1-PHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:406 , HOH A:658BINDING SITE FOR RESIDUE MG A 501
2AC2SOFTWAREASP A:406 , HOH A:948BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREARG A:333 , LYS A:351 , LYS A:360 , HIS A:363 , TYR A:366 , ASN A:377 , ASN A:386 , LYS A:392 , HOH A:601 , HOH A:639 , HOH A:792 , HOH A:927BINDING SITE FOR RESIDUE GP1 A 503
4AC4SOFTWAREASP A:400 , PHE A:402 , GLY A:418 , ALA A:419 , THR A:420BINDING SITE FOR RESIDUE EDO A 504
5AC5SOFTWAREPRO A:29 , ALA A:31 , GLY A:32 , GLU A:236 , ARG A:263BINDING SITE FOR RESIDUE EDO A 505
6AC6SOFTWAREARG A:263 , ASP A:275 , GLU A:281 , ARG A:291 , GLY A:293 , THR A:294BINDING SITE FOR RESIDUE EDO A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FCE)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:327 -Pro A:328
2Ala A:411 -Pro A:412

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FCE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FCE)

(-) Exons   (0, 0)

(no "Exon" information available for 4FCE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:441
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4fcea1 A:4-251 automated matches                                                                                                                                                                                                                  d4fcea2 A:252-449 automated matches                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhh...hhhh.......hhhhhhhhhhhhh..........hhhhhhhhh.........hhhhhhhhhhhhh................hhhhhhhhhhhh................................hhhhh..hhhhh...........hhhhhhhhhh............hhhhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhh............................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fce A   4 SSMSVVILAAGKGTRMYSDLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLNWVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKLDNPSGYGRIVRENGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVISRVKQVHIQGW 449
                                    13        23        33        43        53        63  ||    78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448 
                                                                                         66|                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                          72
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FCE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FCE)

(-) Gene Ontology  (17, 34)

Asymmetric Unit(hide GO term definitions)

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  4fce
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  GLMU_YERPS | Q663R0
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(-) Related Entries Specified in the PDB File

3fww RELATED ID: CSGID-IDP00427 RELATED DB: TARGETTRACK