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(-) Description

Title :  STRUCTURE OF RIP FROM BARLEY SEEDS
 
Authors :  B. -G. Lee, M. K. Kim, S. W. Suh, H. K. Song
Date :  23 May 12  (Deposition) - 31 Oct 12  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Ribosome Inactivating Protein, Rrna N-Glycosylase Activity, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. G. Lee, M. K. Kim, B. W. Kim, S. W. Suh, H. K. Song
Structures Of The Ribosome-Inactivating Protein From Barley Seeds Reveal A Unique Activation Mechanism.
Acta Crystallogr. , Sect. D V. 68 1488 2012
PubMed-ID: 23090398  |  Reference-DOI: 10.1107/S0907444912037110

(-) Compounds

Molecule 1 - PROTEIN SYNTHESIS INHIBITOR I
    Chains: A
    EC Number: 3.2.2.22
    Organism Common: BARLEY
    Organism Scientific: HORDEUM VULGARE
    Organism Taxid: 4513
    Synonym: RIBOSOME-INACTIVATING PROTEIN I, RRNA N-GLYCOSIDASE
    Tissue: SEED

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:87 , LEU A:88 , LYS A:150 , ARG A:178 , HOH A:421 , HOH A:438 , HOH A:456 , HOH A:466BINDING SITE FOR RESIDUE AMP A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FBH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FBH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FBH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FBH)

(-) Exons   (0, 0)

(no "Exon" information available for 4FBH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...hhhhhhhhhhhhhhhhh....ee..ee.............eeeeeee.......eeeeee.....eeeee.....eee.........ee.....hhhhhhhhhhhhhhh.eehhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh..........hhhhh..hhhhhhhhh............hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fbh A   4 KMAKNVDKPLFTATFNVQASSADYATFIAGIRNKLRNPAHFSHNRPVLPPVEPNVPPSRWFHVVLKASPTSAGLTLAIRADNIYLEGFKSSDGTWWELTPGLIPGATYVGFGGTYRDLLGDTDKLTNVALGRQQLADAVTALHGRTKADKPSGPKQQQAREAVTTLLLMVNEATRFQTVSGFVAGLLHPKSGKIGNEMKAQVNGWQDLSAALLKTDVKPPAKFAPIEKMGVRTAVQAANTLGILLFVEVPGGLTVAKALELFHASGGK 281
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       198       208       218       228|      243       253       263       273        
                                                                                                                                                                                                                      192|                           228|                                               
                                                                                                                                                                                                                       198                            234
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FBH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FBH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FBH)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fbh
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  RIP1_HORVU | P22244
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  3.2.2.22
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIP1_HORVU | P22244: 4fb9 4fba 4fbb 4fbc

(-) Related Entries Specified in the PDB File

4fb9 4fba 4fbb 4fbc