4F45 - JenaLib

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Title :   CRYSTAL STRUCTURE OF HUMAN CD38 E226Q MUTANT IN COMPLEX WITH NAADP

Authors :   H. Zhang, H. C. Lee, Q. Hao

Date :   10 May 12 (Deposition) - 03 Apr 13 (Release) - 03 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cd38, Adp-Ribosyl Cyclase, Naadp, Calcium Signaling, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Zhang, R. Graeff, H. C. Lee, Q. Hao
Crystal Structures Of Human Cd38 In Complex With Naadp And Adprp
Messenger V. 2 44 2013
PubMed: search

Molecule 1 - ADP-RIBOSYL CYCLASE 1
	Chains	:	A, B
	EC Number	:	3.2.2.5
	Engineered	:	YES
	Expression System	:	PICHIA PASTORIS
	Expression System Plasmid	:	PPICZALPHA
	Expression System Strain	:	X33
	Expression System Taxid	:	4922
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 46-300
	Gene	:	CD38
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CYCLIC ADP-RIBOSE HYDROLASE 1, CADPR HYDROLASE 1, T10

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	DN4	2	Ligand/Ion	[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL][(2R,3S,4R,5R)-5-(3-CARBOXYPYRIDIN-1-IUM-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	DN4	1	Ligand/Ion	[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL][(2R,3S,4R,5R)-5-(3-CARBOXYPYRIDIN-1-IUM-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	DN4	1	Ligand/Ion	[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL][(2R,3S,4R,5R)-5-(3-CARBOXYPYRIDIN-1-IUM-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:125 , SER A:126 , ARG A:127 , LEU A:145 , GLU A:146 , ASP A:155 , ASP A:156 , TRP A:176 , TRP A:189 , SER A:193 , ASP A:219 , SER A:220 , THR A:221 , PHE A:222 , GLN A:226 , HOH A:502	BINDING SITE FOR RESIDUE DN4 A 401
2	AC2	SOFTWARE	TRP B:125 , SER B:126 , ARG B:127 , LEU B:145 , GLU B:146 , ASP B:155 , TRP B:176 , TRP B:189 , SER B:193 , ASP B:219 , SER B:220 , THR B:221 , PHE B:222 , GLN B:226 , HOH B:501	BINDING SITE FOR RESIDUE DN4 B 401

Asymmetric Unit

No.	Residues
1	A:67	-	A:82
2	A:99	-	A:180
3	A:119	-	A:201
4	A:160	-	A:173
5	A:254	-	A:275
6	A:287	-	A:296
7	B:67	-	B:82
8	B:99	-	B:180
9	B:119	-	B:201
10	B:160	-	B:173
11	B:254	-	B:275
12	B:287	-	B:296

(no "Cis Peptide Bond" information available for 4F45)

(no "SAP(SNP)/Variant" information available for 4F45)

(no "PROSITE Motif" information available for 4F45)

(no "Exon" information available for 4F45)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains d4f45a_ A: ADP ribosyl cyclase                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhh.eeee.hhhhhhhhhhhh....hhhhhhhhhhhh................ee.........hhhhhhhhhhhhhhhhh..eeeeeeee..........hhhhhhhhhhh....eeeeeeeee....hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f45 A  44 EFWRQTWSGPGTTKRFPETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFDTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLDGSRSKIFDKDSTFGSVQVHNLQPEKVQTLEAWVIHGGRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSC 296
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243  ||   257       267       277       287         
                                                                                                                                                                                                                                    246|                                             
                                                                                                                                                                                                                                     251

Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d4f45b_ B: ADP ribosyl cyclase                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhh.eeee.hhhhhhhhhhhh....hhhhhhhhhhhh................ee.........hhhhhhhhhhhhhhhhhh.eeeeeeee..........hhhhhh.........eeeeeeeee...hhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f45 B  45 FWRQTWSGPGTTKRFPETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCDITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFDTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLDGSRSKIFDKDSTFGSVQVHNLQPEKVQTLEAWVIHGRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSC 296
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244||     259       269       279       289       
                                                                                                                                                                                                                                  245|                                             
                                                                                                                                                                                                                                   251

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: N-(deoxy)ribosyltransferase-like (76)

Family: ADP ribosyl cyclase-like (60)

Protein domain: ADP ribosyl cyclase (42)

Human (Homo sapiens) [TaxId: 9606] (33)

1a	d4f45a_	A:
1b	d4f45b_	B:

(no "CATH Domain" information available for 4F45)

(no "Pfam Domain" information available for 4F45)

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	4f45
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Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (12, 12)

Cis Peptide Bonds (0, 0)

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Gene Ontology (37, 37)

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