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(-) Description

Title :  STRUCTURE OF RPE65: P6522 CRYSTAL FORM, IRIDIUM DERIVATIVE
 
Authors :  P. D. Kiser, K. Palczewski
Date :  09 May 12  (Deposition) - 03 Oct 12  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Monotopic Membrane Protein, Metalloprotein, Non-Heme Iron Protein, Beta-Propeller, Smooth Er Membrane, Isomerase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. D. Kiser, E. R. Farquhar, W. Shi, X. Sui, M. R. Chance, K. Palczewski
Structure Of Rpe65 Isomerase In A Lipidic Matrix Reveals Roles For Phospholipids And Iron In Catalysis.
Proc. Natl. Acad. Sci. Usa V. 109 E2747 2012
PubMed-ID: 23012475  |  Reference-DOI: 10.1073/PNAS.1212025109

(-) Compounds

Molecule 1 - RETINOID ISOMEROHYDROLASE
    Chains: A
    EC Number: 3.1.1.64
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: RPE65, RETINOID ISOMERASE, ALL-TRANS-RETINYL-PALMITATE HYDROLASE, RETINAL PIGMENT EPITHELIUM-SPECIFIC 65 KDA PROTEIN, RETINOL ISOMERASE
    Tissue: RETINA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION
2IR31Ligand/IonIRIDIUM (III) ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FE22Ligand/IonFE (II) ION
2IR32Ligand/IonIRIDIUM (III) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:861BINDING SITE FOR RESIDUE IR3 A 601
2AC2SOFTWAREHIS A:180 , HIS A:241 , HIS A:313 , HIS A:527BINDING SITE FOR RESIDUE FE2 A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F3A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F3A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F3A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F3A)

(-) Exons   (0, 0)

(no "Exon" information available for 4F3A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:515
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhh........ee.eeee.......eeeeeeeeee.ee..ee.......eeeeeeeeee..eeeeeeee..hhhhhhhhhh........................eeeee..eeeee....eeeee......eeeeee..............ee.....eeeeeeee.....eeeeeeee........hhhhhheeeeeee.............ee...eeeeee..eeehhhhhhhhh......hhh.eee.....eeeeeee....eeeeeeeee..eeeeeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...hhhhh............eeee....eeeee.eeeee...eeeeeee.hhhhhh.....eeeeeeee..eeeeeeeee.....eeee..........eeee.........eeeeeeee........eeeeeee.....eeeeeee........eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f3a A   4 QVEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPGVEVTDNALVNIYPVGEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHEFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS 533
                                    13        23        33        43        53        63        73        83        93       103     ||128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528     
                                                                                                                                   109|                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                    125
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F3A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F3A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F3A)

(-) Gene Ontology  (20, 20)

Asymmetric Unit(hide GO term definitions)

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  4f3a
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  RPE65_BOVIN | Q28175
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  3.1.1.64
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPE65_BOVIN | Q28175: 3fsn 3kvc 4f2z 4f30 4f3d 4rsc 4rse 4ryx 4ryy 4ryz 4zhk 5ul5 5ulg

(-) Related Entries Specified in the PDB File

3fsn 4f2z 4f30 4f3d