4F19 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   SUBATOMIC RESOLUTION STRUCTURE OF A HIGH AFFINITY PERIPLASMIC PHOSPHATE-BINDING PROTEIN (PFLUDING) BOUND WITH ARSENATE AT PH 4.5

Authors :   M. Elias, A. Wellner, K. Goldin, E. Chabriere, D. S. Tawfik

Date :   06 May 12 (Deposition) - 05 Sep 12 (Release) - 21 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   0.95

Chains :   Asym./Biol. Unit : A

Keywords :   Phosphate-Binding Protein, Psts, Periplasmic Binding Protein, Ding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Elias, A. Wellner, K. Goldin-Azulay, E. Chabriere, J. A. Vorholt, T. J. Erb, D. S. Tawfik
The Molecular Basis Of Phosphate Discrimination In Arsenate-Rich Environments.
Nature V. 491 134 2012
PubMed-ID: 23034649 | Reference-DOI: 10.1038/NATURE11517

Molecule 1 - PUTATIVE ALKALINE PHOSPHATASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PFLU_2427
	Organism Scientific	:	PSEUDOMONAS FLUORESCENS
	Organism Taxid	:	216595
	Strain	:	SBW25

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	8AR	1	Ligand/Ion	HYDROGEN ARSENATE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:1007 , THR A:1008 , LEU A:1009 , GLY A:1031 , SER A:1032 , ASP A:1062 , ARG A:1141 , SER A:1145 , GLY A:1146 , THR A:1147	BINDING SITE FOR RESIDUE 8AR A 1401

Asymmetric/Biological Unit

No.	Residues
1	A:1114	-	A:1159
2	A:1300	-	A:1363

(no "Cis Peptide Bond" information available for 4F19)

(no "SAP(SNP)/Variant" information available for 4F19)

(no "PROSITE Motif" information available for 4F19)

(no "Exon" information available for 4F19)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4f19a_ A: Phosphate-binding protein                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...hhhhhh............ee.hhhhhhhhhhhhhhhhh..........eeee....hhhhhhhhhhhhhhhhh.eeeeeeeeee....ee.......eehhhhhhhhhhh...hhhhh.........eeeee...hhhhhhhhhhhhhhh...........hhhhh.........eeehhhhhhhhhhh....ee..........hhhhhhh.....ee.............hhhhhhhhhhh....hhhhh.hhhhhh..ee.......ee........eeeeeeeee....hhhhhhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f19 A 1000 MDINGGGATLPQALYQTSGVLTAGFAQYIGVGSGNGKAAFLNNDYTKFQAGVTNKNVHWAGSDSKLSATELSTYASAKQPTWGKLIQVPSVGTSVAIPFNKSGSAAVDLSVQELCGVFSGRINTWDGISGSGRTGPIVVVYRSESSGTTELFTRFLNAKCNAETGNFAVTTTFGTSFSGGLPAGAVAATGSQGVMTALAAGDGRITYMSPDFAAPTLAGLDDATKVARVGKNVATNTQGVSPAAANVSAAIGAVPVPAAADRSNPDAWVPVFGPDNTAGVQPYPTSGYPILGFTNLIFSQCYADATQTTQVRDFFTKHYGASNNNDAAITANAFVPLPTAWKATVRASFLTASNALSIGNTNVCNGIGRPLLEAA 1374
                                  1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: Phosphate binding protein-like (463)

Protein domain: Phosphate-binding protein (19)

Pseudomonas fluorescens [TaxId: 294] (4)

d4f19a_

(no "CATH Domain" information available for 4F19)

(no "Pfam Domain" information available for 4F19)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Sites
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4f19)

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	4f19
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		Interatomic Contacts of Structural Units	:	CSU
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UniProtKB/TrEMBL
	C3K8K1_PSEFS \| C3K8K1	:	4f18 4f1u 4f1v

2q9t	THE SAME PROTEIN AT LOWER RESOLUTION WITH BOUND PHOSPHATE
3g62	THE SAME PROTEIN WITH BOUND PHOSPHATE AT PH 4.5 AND 0.98A RESOLUTION
3g63	THE SAME PROTEIN WITH BOUND PHOSPHATE AT PH 8.5 AND 0.88A RESOLUTION
4f18	THE SAME PROTEIN WITH BOUND ARSENATE AT PH 8.5 AND 0.96A RESOLUTION

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 1)

CATH Domains (0, 0)

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Gene Ontology (5, 5)

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