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(-) Description

Title :  CRYSTAL STRUCTURE OF THE Y361F MUTANT OF STAPHYLOCOCCUS AUREUS COADR
 
Authors :  B. D. Wallace, J. S. Edwards, J. R. Wallen, A. Claiborne, M. R. Redinbo
Date :  19 Apr 12  (Deposition) - 17 Oct 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. D. Wallace, J. S. Edwards, J. R. Wallen, W. J. Moolman, R. Van Der Westhuyzen, E. Strauss, M. R. Redinbo, A. Claiborne
Turnover-Dependent Covalent Inactivation Of Staphylococcus Aureus Coenzyme A-Disulfide Reductase By Coenzyme A-Mimetics: Mechanistic And Structural Insights.
Biochemistry V. 51 7699 2012
PubMed-ID: 22954034  |  Reference-DOI: 10.1021/BI301026C

(-) Compounds

Molecule 1 - COENZYME A DISULFIDE REDUCTASE
    Chains: A, B
    EC Number: 1.8.1.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: T7, PXCDR
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CDR, SAUSA300_0873
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 367830
    Strain: USA300
    Synonym: COA-DISULFIDE REDUCTASE, COADR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2COA2Ligand/IonCOENZYME A
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4MG3Ligand/IonMAGNESIUM ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:902BINDING SITE FOR RESIDUE MG A 501
02AC2SOFTWAREALA A:41 , CYS A:43 , COA A:505 , PHE B:361 , HOH B:3571BINDING SITE FOR RESIDUE CL A 502
03AC3SOFTWAREHOH A:907 , HOH A:1241BINDING SITE FOR RESIDUE CL A 503
04AC4SOFTWAREASN A:85 , GLU A:87 , ARG A:88 , HOH A:1240BINDING SITE FOR RESIDUE CL A 504
05AC5SOFTWAREALA A:14 , THR A:15 , SER A:18 , GLN A:19 , ARG A:22 , SER A:39 , PHE A:40 , ASN A:42 , CYS A:43 , TYR A:62 , LYS A:71 , ALA A:295 , HIS A:299 , CL A:502 , FAD A:506 , HOH A:729 , HOH A:764 , HOH A:849 , HOH A:954 , HOH A:983 , HOH A:1063 , HOH A:1085 , HOH A:1089 , HOH A:1096 , HOH A:1201 , HOH A:1213 , TYR B:419 , PRO B:426 , LYS B:427 , MET B:432 , TYR B:435 , MG B:3003BINDING SITE FOR RESIDUE COA A 505
06AC6SOFTWAREVAL A:7 , GLY A:8 , VAL A:10 , ALA A:11 , GLY A:12 , PHE A:32 , GLU A:33 , LYS A:34 , ASP A:35 , ASN A:42 , CYS A:43 , HIS A:79 , GLU A:80 , VAL A:81 , SER A:112 , PRO A:113 , GLY A:114 , LEU A:130 , ARG A:131 , TYR A:158 , VAL A:159 , PHE A:245 , GLY A:276 , ASP A:277 , PRO A:293 , LEU A:294 , ALA A:295 , ALA A:298 , COA A:505 , HOH A:601 , HOH A:602 , HOH A:604 , HOH A:610 , HOH A:612 , HOH A:613 , HOH A:630 , HOH A:640 , HOH A:651 , TYR B:419 , ALA B:420 , PRO B:421BINDING SITE FOR RESIDUE FAD A 506
07AC7SOFTWAREPHE A:361 , HOH A:1239 , ALA B:41 , ASN B:42 , CYS B:43 , COA B:3006BINDING SITE FOR RESIDUE CL B 3001
08AC8SOFTWAREHOH A:665 , HOH A:683 , HOH A:709 , HOH A:1240 , HOH B:3179 , HOH B:3214BINDING SITE FOR RESIDUE MG B 3002
09AC9SOFTWARECOA A:505 , HOH A:781 , HOH B:3286 , HOH B:3353BINDING SITE FOR RESIDUE MG B 3003
10BC1SOFTWAREVAL B:353 , THR B:354 , HOH B:3311BINDING SITE FOR RESIDUE CL B 3004
11BC2SOFTWAREHOH A:709 , HOH A:1110 , ASN B:85 , ASP B:86 , GLU B:87 , ARG B:88BINDING SITE FOR RESIDUE CL B 3005
12BC3SOFTWAREMET A:432 , TYR A:435 , ALA B:11 , ALA B:14 , THR B:15 , SER B:18 , GLN B:19 , ARG B:22 , SER B:39 , PHE B:40 , ASN B:42 , CYS B:43 , ALA B:61 , TYR B:62 , LYS B:71 , ALA B:295 , HIS B:299 , CL B:3001 , FAD B:3007 , HOH B:3257 , HOH B:3418 , HOH B:3497 , HOH B:3501 , HOH B:3614BINDING SITE FOR RESIDUE COA B 3006
13BC4SOFTWARETYR A:419 , ALA A:420 , PRO A:421 , VAL B:7 , GLY B:8 , VAL B:10 , ALA B:11 , GLY B:12 , PHE B:32 , GLU B:33 , LYS B:34 , ASP B:35 , ASN B:42 , CYS B:43 , HIS B:79 , GLU B:80 , VAL B:81 , SER B:112 , PRO B:113 , GLY B:114 , LEU B:130 , ARG B:131 , TYR B:158 , ASN B:242 , PHE B:245 , GLY B:276 , ASP B:277 , PRO B:293 , LEU B:294 , ALA B:295 , COA B:3006 , HOH B:3111 , HOH B:3114 , HOH B:3115 , HOH B:3127 , HOH B:3129 , HOH B:3135 , HOH B:3138 , HOH B:3149 , HOH B:3156 , HOH B:3419BINDING SITE FOR RESIDUE FAD B 3007

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EQR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EQR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EQR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EQR)

(-) Exons   (0, 0)

(no "Exon" information available for 4EQR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhh....eeeee.......hhhhhhhhhh....hhhhh...hhhhhhhhhh.eeee.eeeeeee....eeeeee....eeeeee..eeee...eee.........ee...hhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhhh...eee...eeeee..eeee....eee..eeee...eee.hhhhh...........ee...........eee....eeee......ee...hhhhhhhhhhhhhhhhhh............eeeee..eeeeeee.hhhhhhhh.eeeeeeeee..........eeeeeeeee.....eeeeeeee..hhhhhhhhhhhhhh...hhhhhhhh............hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eqr A   2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANFYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGYKAK 438
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       


Chain B from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhh....eeee........hhhhhhhhhh....hhhhhh..hhhhhhhhhh.eee..eeeeeee....eeeeee....eeeeee..eeee...eee.........ee...hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhh...eee...eeeee..eeee....eee..eeee...eee.hhhhh...........ee...........eee....eeee......ee...hhhhhhhhhhhhhhhhhh............eeeee..eeeeeee.hhhhhhhh.eeeeeeeee..........eeeeeeeee.....eeeeeeee..hhhhhhhhhhhhhhh...hhhhhhh............hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eqr B   2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANFYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGYKAK 438
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EQR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EQR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EQR)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CDR_STAA3 | Q2FIA5: 4em3 4em4 4emw 4eqs 4eqw 4eqx

(-) Related Entries Specified in the PDB File

1yqz STRUCTURE OF COENZYME A-DISULFIDE REDUCTASE FROM STAPHYLOCOCCUS AUREUS REFINED AT 1.54 ANGSTROM RESOLUTION
4em3
4em4
4emw
4eqs
4eqw
4eqx