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(-) Description

Title :  THERMUS THERMOPHILUS RUVC STRUCTURE
 
Authors :  L. Chen, K. Shi, Z. Q. Yin, H. Aihara
Date :  17 Apr 12  (Deposition) - 14 Nov 12  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Resolvase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, K. Shi, Z. Yin, H. Aihara
Structural Asymmetry In The Thermus Thermophilus Ruvc Dimer Suggests A Basis For Sequential Strand Cleavages During Holliday Junction Resolution.
Nucleic Acids Res. V. 41 648 2013
PubMed-ID: 23118486  |  Reference-DOI: 10.1093/NAR/GKS1015

(-) Compounds

Molecule 1 - CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC
    Chains: A, B
    EC Number: 3.1.22.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RUVC, TTHA1090
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Synonym: HOLLIDAY JUNCTION NUCLEASE RUVC, HOLLIDAY JUNCTION RESOLVASE RUVC

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:7 , HIS B:143 , HOH B:328 , HOH B:448BINDING SITE FOR RESIDUE MG B 201
2AC2SOFTWAREGLU A:123 , HOH A:341 , MET B:1 , GLU B:65 , ALA B:158 , HOH B:307 , HOH B:319 , HOH B:402 , HOH B:439BINDING SITE FOR RESIDUE GOL B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EP4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:140 -Pro A:141
2Arg B:140 -Pro B:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EP4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EP4)

(-) Exons   (0, 0)

(no "Exon" information available for 4EP4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeeeee.......eeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ep4 A   1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMGTAKPL 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      


Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeeeeee.......eeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ep4 B   1 MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMGTAKPL 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EP4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EP4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EP4)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ep4
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  RUVC_THET8 | Q5SJC4
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  3.1.22.4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUVC_THET8 | Q5SJC4: 4ep5 4ld0

(-) Related Entries Specified in the PDB File

4ep5