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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN OF HUMAN TBK1
 
Authors :  J. Li, J. Li, A. Miyahira, J. Sun, Y. Liu, G. Cheng, H. Liang
Date :  30 Mar 12  (Deposition) - 27 Jun 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Ubiquitin Like Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Li, J. Li, A. Miyahira, J. Sun, Y. Liu, G. Cheng, H. Liang
Crystal Structure Of The Ubiquitin-Like Domain Of Human Tbk1.
Protein Cell V. 3 383 2012
PubMed-ID: 22610919  |  Reference-DOI: 10.1007/S13238-012-2929-1

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE TBK1
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UBIQUITIN-LIKE DOMAIN, UNP RESIDUE 302-383
    Gene: TBK1, NAK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NF-KAPPA-B-ACTIVATING KINASE, T2K, TANK-BINDING KINASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4EFO)

(-) Sites  (0, 0)

(no "Site" information available for 4EFO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EFO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro A:298 -Leu A:299

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EFO)

(-) Exons   (0, 0)

(no "Exon" information available for 4EFO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.eeeeeeee....eeeeeeee...hhhhhhhhhhhhhh.hhh.eeeee..eee......hhhhh........eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 4efo A 298 PLGSTSDILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSLER 386
                                   307       317       327       337       347       357       367       377         


Chain B from PDB  Type:PROTEIN  Length:82
                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhh.eeeeeeee....eeeeeeee...hhhhhhhhhhhhhh.hhh.eeeee..eee......hhhhh........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 4efo B 304 DILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSLE 385
                                   313       323       333       343       353       363       373       383
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EFO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EFO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EFO)

(-) Gene Ontology  (38, 38)

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  Cis Peptide Bonds
    Pro A:298 - Leu A:299   [ RasMol ]  
 
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  4efo
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  TBK1_HUMAN | Q9UHD2
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBK1_HUMAN | Q9UHD2: 4eut 4euu 4im0 4im2 4im3 4iw0 4iwo 4iwp 4iwq 5eoa 5eof 5ep6

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4EFO)