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(-) Description

Title :  YEAST POLYAMINE OXIDASE FMS1, H67Q MUTANT
 
Authors :  A. B. Taylor, M. S. Adachi, P. J. Hart, P. F. Fitzpatrick
Date :  26 Mar 12  (Deposition) - 13 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fad Cofactor, Oxidase, Flavoenzyme, Mutant, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Adachi, A. B. Taylor, P. J. Hart, P. F. Fitzpatrick
Mechanistic And Structural Analyses Of The Role Of His67 In The Yeast Polyamine Oxidase Fms1.
Biochemistry V. 51 4888 2012
PubMed-ID: 22642831  |  Reference-DOI: 10.1021/BI300517S

(-) Compounds

Molecule 1 - POLYAMINE OXIDASE FMS1
    Chains: A, B
    EC Number: 1.5.3.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FMS1, YM9711.09, YMR020W
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: FENPROPIMORPH RESISTANCE MULTICOPY SUPPRESSOR 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:14 , GLY A:15 , ALA A:16 , GLY A:17 , ILE A:18 , ALA A:19 , LEU A:38 , GLU A:39 , ALA A:40 , ARG A:41 , GLY A:46 , ARG A:47 , GLY A:62 , ALA A:63 , SER A:64 , TRP A:65 , GLN A:67 , CYS A:221 , VAL A:223 , VAL A:253 , GLY A:270 , LEU A:294 , TYR A:445 , ALA A:449 , TYR A:450 , GLY A:478 , GLU A:479 , GLY A:487 , CYS A:488 , ALA A:489 , ALA A:492 , HOH A:907 , HOH A:915 , HOH A:922 , HOH A:929 , HOH A:932BINDING SITE FOR RESIDUE FAD A 801
2AC2SOFTWAREGLY B:15 , ALA B:16 , GLY B:17 , ILE B:18 , ALA B:19 , LEU B:38 , GLU B:39 , ALA B:40 , ARG B:41 , GLY B:46 , ARG B:47 , GLY B:62 , ALA B:63 , SER B:64 , TRP B:65 , GLN B:67 , CYS B:221 , VAL B:223 , THR B:252 , VAL B:253 , PRO B:254 , GLY B:270 , LEU B:294 , ALA B:449 , TYR B:450 , GLY B:478 , GLU B:479 , GLY B:487 , CYS B:488 , ALA B:489 , ALA B:492 , HOH B:906 , HOH B:926BINDING SITE FOR RESIDUE FAD B 801

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:221 -A:238
2B:221 -B:238

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Ser A:5 -Pro A:6
2Leu A:199 -Asn A:200
3Gln A:275 -Pro A:276
4Ala A:378 -Pro A:379
5Leu B:199 -Asn B:200
6Gln B:275 -Pro B:276
7Ala B:378 -Pro B:379

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ECH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ECH)

(-) Exons   (0, 0)

(no "Exon" information available for 4ECH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhh....eeee...........eee.hhh.eee....ee.....hhhhhhhhhhhhhhh...eee.....eeee...ee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......hhhhhh.......eee.hhhhhhhhhhhhhhhh.ee....eeeeeee...eeeeee....eeeeeeeee..hhhhhhhhhh.........eee...hhhhhhhhhhheee..eeeeeee..........eeee....hhhhhhhhhhh.hhhhhhhhhh...hhhhh.eeeeehhhhhh..eeeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....ee......eeeeeee............eee.....hhhhhhhhhhhh....eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ech A   5 SPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHQDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510
                                    14        24        34        44        54        64        74        84        94       104       114       124      |136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336     ||353       363       373       383       393       403       413    || 431       441       451       461       471       481       491       501         
                                                                                                                                                        131|                                                                                                                                                                                                             342|                                                                 418|                                                                                   
                                                                                                                                                         134                                                                                                                                                                                                              350                                                                  427                                                                                   


Chain B from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhh.....eee...........eee.hhh.eee....ee.....hhhhhhhhhhhhhhh...ee......eeee...ee.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh...................eee.hhhhhhhhhhhhhhhh.ee....eeeeeee...eeeeee....eeee.eeee..hhhhhhhhhh.........eee...hhhhhhh....eee..eeeeeee..........eeeee...hhhhhhhhhhh.hhhhhhhhhhh........eeeeehhhhh...eeeeee..hhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....ee.........eeeeeee............eee.....hhhhhhhhhhh.....eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ech B   9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHQDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSKFAELEFDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLERSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLE 510
                                    18        28        38        48        58        68        78        88        98       108       118       128 ||    145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335      |352       362       372       382       392       402       412       427       437       447       457       467       477       487       497       507   
                                                                                                                                                   130|                                                                                                                                                                                                         342|                                                                    421|                                                                                   
                                                                                                                                                    138                                                                                                                                                                                                          350                                                                     427
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ECH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ECH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ECH)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:378 - Pro A:379   [ RasMol ]  
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    Gln A:275 - Pro A:276   [ RasMol ]  
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    Leu A:199 - Asn A:200   [ RasMol ]  
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  4ech
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  FMS1_YEAST | P50264
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  1.5.3.17
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FMS1_YEAST | P50264: 1rsg 1xpq 1yy5 1z6l 3bi2 3bi4 3bi5 3bnm 3bnu 3cn8 3cnd 3cnp 3cns 3cnt 4gdp

(-) Related Entries Specified in the PDB File

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