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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PERB FROM CAULOBACTER CRESCENTUS IN COMPLEX WITH COENZYME A AND GDP-N-ACETYLPEROSAMINE AT 1 ANGSTROM RESOLUTION
 
Authors :  J. B. Thoden, L. A. Reinhardt, P. D. Cook, P. Menden, W. W. Cleland, H. M. H
Date :  22 Mar 12  (Deposition) - 04 Apr 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Helix, Acetyltransferase, Acetyl Coenzyme A, Gdp-Perosamine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Thoden, L. A. Reinhardt, P. D. Cook, P. Menden, W. W. Cleland, H. M. Holden
Catalytic Mechanism Of Perosamine N-Acetyltransferase Revealed By High-Resolution X-Ray Crystallographic Studies And Kinetic Analyses.
Biochemistry V. 51 3433 2012
PubMed-ID: 22443398  |  Reference-DOI: 10.1021/BI300197H

(-) Compounds

Molecule 1 - PEROSAMINE N-ACETYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CC_1011, WBQR
    Organism Scientific: CAULOBACTER VIBRIOIDES
    Organism Taxid: 155892
    Synonym: PERB, HEXAPEPTIDE TRANSFERASE FAMILY PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2COA1Ligand/IonCOENZYME A
3JB31Ligand/IonGDP-N-ACETYLPEROSAMINE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2COA3Ligand/IonCOENZYME A
3JB33Ligand/IonGDP-N-ACETYLPEROSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:150 , PRO A:153 , PHE A:168 , GLY A:170 , VAL A:171 , PRO A:177 , GLY A:188 , ALA A:189 , VAL A:194 , ILE A:204 , PRO A:207 , LYS A:211 , JB3 A:1002 , HOH A:4009 , HOH A:4028 , HOH A:4050 , HOH A:4080 , HOH A:4100 , HOH A:4125 , HOH A:4135 , HOH A:4165 , HOH A:4168 , HOH A:4170 , HOH A:4173 , HOH A:4182 , HOH A:4189 , HOH A:4191 , HOH A:4199 , HOH A:4207 , HOH A:4208BINDING SITE FOR RESIDUE COA A 1001
2AC2SOFTWAREILE A:13 , GLY A:16 , GLY A:17 , HIS A:18 , VAL A:37 , ASP A:38 , ALA A:39 , ASP A:40 , ASP A:55 , ILE A:73 , GLY A:74 , LEU A:78 , ASP A:140 , HIS A:141 , HIS A:150 , GLY A:159 , PRO A:177 , COA A:1001 , HOH A:4004 , HOH A:4007 , HOH A:4008 , HOH A:4023 , HOH A:4046 , HOH A:4167 , HOH A:4180 , HOH A:4187 , HOH A:4190 , HOH A:4194 , HOH A:4201BINDING SITE FOR RESIDUE JB3 A 1002
3AC3SOFTWAREARG A:27 , VAL A:33 , HOH A:4052 , HOH A:4255BINDING SITE FOR RESIDUE CL A 1003
4AC4SOFTWAREGLY A:90 , LYS A:209 , ILE A:210 , HOH A:4118 , HOH A:4235BINDING SITE FOR RESIDUE CL A 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EA8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:206 -Pro A:207

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EA8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EA8)

(-) Exons   (0, 0)

(no "Exon" information available for 4EA8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhhh...eeeee..........eeehhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..ee..ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee....ee........eee....ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ea8 A   3 ASLAIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPAKIKG 212
                                    12        22        32        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       
                                                                 41|                                                                                                                                                                       
                                                                  45
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EA8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EA8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EA8)

(-) Gene Ontology  (1, 1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O85353_CAUVI | O85353: 4ea7 4ea9 4eaa 4eab

(-) Related Entries Specified in the PDB File

4ea7 WILD TYPE ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE
4ea9 WILD TYPE ENZYME IN COMPLEX WITH TRANSITION STATE ANALOG
4eaa H141N MUTANT ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE
4eab H141A MUTANT ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE