4E86 - JenaLib

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Title :   CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 5, HD5 (LEU29ABA MUTANT)

Authors :   X. Wu, M. Pazgier

Date :   19 Mar 12 (Deposition) - 16 May 12 (Release) - 19 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.75

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,L
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: L  (1x)
Biol. Unit 10: A,B  (1x)
Biol. Unit 11: C,D  (1x)
Biol. Unit 12: E,F  (1x)
Biol. Unit 13: G,H  (1x)
Biol. Unit 14: L  (2x)

Keywords :   Mutant Leu29Aba, Beta-Sheet, Antimicrobial Peptide, Paneth Cells, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Rajabi, B. Ericksen, X. Wu, E. De Leeuw, L. Zhao, M. Pazgier, W. Lu
Functional Determinants Of Human Enteric {Alpha}-Defensin Hd5: Crucial Role For Hydrophobicity At Dimer Interface.
J. Biol. Chem. V. 287 21615 2012
PubMed-ID: 22573326 | Reference-DOI: 10.1074/JBC.M112.367995

Molecule 1 - DEFENSIN-5
	Chains	:	A, B, C, D, E, F, G, H, L
	Engineered	:	YES
	Fragment	:	UNP RESIDUES 63-94
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ALPHA-DEFENSIN 5, HD5, DEFENSIN, ALPHA 5
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9
Asymmetric Unit	:	A	B	C	D	E	F	G	H	L
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									L
Biological Unit 10 (1x)	:	A	B
Biological Unit 11 (1x)	:			C	D
Biological Unit 12 (1x)	:					E	F
Biological Unit 13 (1x)	:							G	H
Biological Unit 14 (2x)	:									L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	ABA	9	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	3	Ligand/Ion	CHLORIDE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 7 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 8 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 9 (1, 1)

No.	Name	Count	Type	Full Name
1	ABA	1	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 10 (1, 2)

No.	Name	Count	Type	Full Name
1	ABA	2	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 11 (1, 2)

No.	Name	Count	Type	Full Name
1	ABA	2	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 12 (1, 2)

No.	Name	Count	Type	Full Name
1	ABA	2	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 13 (1, 2)

No.	Name	Count	Type	Full Name
1	ABA	2	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 14 (1, 2)

No.	Name	Count	Type	Full Name
1	ABA	2	Mod. Amino Acid	ALPHA-AMINOBUTYRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR B:4 , ARG B:32	BINDING SITE FOR RESIDUE CL B 101
2	AC2	SOFTWARE	THR C:2 , ARG H:13	BINDING SITE FOR RESIDUE CL C 101
3	AC3	SOFTWARE	ARG D:6 , THR D:7 , GLY D:8	BINDING SITE FOR RESIDUE CL D 101

Asymmetric Unit

No.	Residues
1	A:3	-	A:31
2	A:5	-	A:20
3	A:10	-	A:30
4	B:3	-	B:31
5	B:5	-	B:20
6	B:10	-	B:30
7	C:3	-	C:31
8	C:5	-	C:20
9	C:10	-	C:30
10	D:3	-	D:31
11	D:5	-	D:20
12	D:10	-	D:30
13	E:3	-	E:31
14	E:5	-	E:20
15	E:10	-	E:30
16	F:3	-	F:31
17	F:5	-	F:20
18	F:10	-	F:30
19	G:3	-	G:31
20	G:5	-	G:20
21	G:10	-	G:30
22	H:3	-	H:31
23	H:5	-	H:20
24	H:10	-	H:30
25	L:3	-	L:31
26	L:5	-	L:20
27	L:10	-	L:30

(no "Cis Peptide Bond" information available for 4E86)

(no "SAP(SNP)/Variant" information available for 4E86)

(no "PROSITE Motif" information available for 4E86)

(no "Exon" information available for 4E86)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ..eeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4e86 A  1 ATCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    10        20        30  
                                                       29-ABA

Chain B from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4e86 B  1 ATCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    10        20        30  
                                                       29-ABA

Chain C from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ..eeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4e86 C  1 ATCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    10        20        30  
                                                       29-ABA

Chain D from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4e86 D  2 TCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    11        21       |31 
                                                      29-ABA

Chain E from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ..eeee........eeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4e86 E  1 ATCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    10        20        30  
                                                       29-ABA

Chain F from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ..eeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4e86 F  1 ATCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    10        20        30  
                                                       29-ABA

Chain G from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ..eee.........ee.eeeee..eee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4e86 G  1 ATCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    10        20        30  
                                                       29-ABA

Chain H from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4e86 H  2 TCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    11        21       |31 
                                                      29-ABA

Chain L from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .eeee........eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4e86 L  2 TCYCRTGRCATRESLSGVCEISGRLYRaCCR 32
                                    11        21       |31 
                                                      29-ABA

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4E86)

(no "CATH Domain" information available for 4E86)

(no "Pfam Domain" information available for 4E86)

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	4e86
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	DEF5_HUMAN \| Q01523	:	1zmp 2lxz 2mit 3i5w 4e82 4e83 4rbw 4rbx 5cui 5cuj 5cum

1zmp	CRYSTAL STRUCTURE OF WILD TYPE HD5
4e82	CRYSTAL STRUCTURE OF MONOMERIC FORM OF HUMAN ALPHA-DEFENSIN 5, HD5
4e83	CRYSTAL STRUCTURE OF HUMAN ALPHA-DEFENSIN 5, HD5 (LEU29NLE MUTANT)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (3, 3)

SS Bonds (27, 27)

Cis Peptide Bonds (0, 0)

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