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(-) Description

Title :  CRYSTAL STRUCTURE OF A OXIDOREDUCTASE FROM RHIZOBIUM ETLI CFN 42
 
Authors :  D. Kumaran, S. Chamala, B. Evans, R. Foti, A. Gizzi, B. Hillerich, A. Kar J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, S. C. Almo, S. Swamina York Structural Genomics Research Consortium (Nysgrc)
Date :  11 Mar 12  (Deposition) - 21 Mar 12  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Psi-Biology, Structural Genomics, Protein Structure Initiative, Nysgrc, Oxidoreductase, New York Structural Genomics Research Consortium, Rossmann Fold, Nad(P) Binding Site, Oxidoreductase, Short Chain Dehydrogenase, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kumaran, S. C. Almo, S. Swaminathan
Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE OXIDOREDUCTASE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RHE_CH03884
    Organism Scientific: RHIZOBIUM ETLI
    Organism Taxid: 347834
    Strain: CFN 42

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 28)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4E3Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E3Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E3Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E3Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E3Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4E3Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with Q2K3F6_RHIEC | Q2K3F6 from UniProtKB/TrEMBL  Length:250

    Alignment length:249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241         
         Q2K3F6_RHIEC     2 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGGR 250
               SCOP domains d4e3za_ A: automated matches                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....------------------........hhhhhhhhhhhhhhhhhh.....eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e3z A   2 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAmFSAVDRQFGRLDGLVNNAGIVDYPQRVDEmSVERIERmLRVNVTGSILCAAEAVRRmSRLYSGQGGAIVNVSSmAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIE------------------SVPmQRAGmPEEVADAILYLLSPSASYVTGSILNVSGGR 250
                                    11        21        31        41        51        61        71|       81        91       101|      111       121       131       141    |  151       161       171       181       191 |       -         -|  |   221       231       241         
                                                                                                 72-MSE                       102-MSE 110-MSE            129-MSE          146-MSE                                        193                212  |    |                              
                                                                                                                                                                                                                                               215-MSE|                              
                                                                                                                                                                                                                                                    220-MSE                          


Chain B from PDB  Type:PROTEIN  Length:228
 aligned with Q2K3F6_RHIEC | Q2K3F6 from UniProtKB/TrEMBL  Length:250

    Alignment length:247
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       
         Q2K3F6_RHIEC     4 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGGR 250
               SCOP domains d4e3zb_ B: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....-------------------.......hhhhhhhhhhhhhhhhhh.....eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e3z B   4 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAmFSAVDRQFGRLDGLVNNAGIVDYPQRVDEmSVERIERmLRVNVTGSILCAAEAVRRmSRLYSGQGGAIVNVSSmAAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIE-------------------VPmQRAGmPEEVADAILYLLSPSASYVTGSILNVSGGR 250
                                    13        23        33        43        53        63        73        83        93       103      |113       123     | 133       143  |    153       163       173       183       193         -       213 |    |223       233       243       
                                                                                               72-MSE                       102-MSE 110-MSE            129-MSE          146-MSE                                        193                 213 |    |                              
                                                                                                                                                                                                                                             215-MSE|                              
                                                                                                                                                                                                                                                  220-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E3Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E3Z)

(-) Gene Ontology  (0, 0)

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