4E3X - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MUS MUSCULUS 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE CRYOPROTECTED IN PROLINE

Authors :   J. J. Tanner, T. A. Pemberton

Date :   10 Mar 12 (Deposition) - 25 Jul 12 (Release) - 29 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.24

Chains :   Asym./Biol. Unit : A,B

Keywords :   Amino Acid Metabolism, Proline Inhibition, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. A. Pemberton, B. R. Still, E. M. Christensen, H. Singh, D. Srivastava, J. J. Tanner
Proline: Mother Nature'S Cryoprotectant Applied To Protein Crystallography.
Acta Crystallogr. , Sect. D V. 68 1010 2012
PubMed-ID: 22868767 | Reference-DOI: 10.1107/S0907444912019580

Molecule 1 - DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, MITOCHONDRIAL
	Chains	:	A, B
	EC Number	:	1.5.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3) PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ALDH4A1
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	P5C DEHYDROGENASE, ALDEHYDE DEHYDROGENASE FAMILY 4 MEMBER A1

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 9)

No.	Name	Count	Type	Full Name
1	16P	1	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE
2	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
3	PRO	7	Mod. Amino Acid	PROLINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:302 , ASP A:303 , PHE A:305 , THR A:307 , LYS B:292 , ALA B:525	BINDING SITE FOR RESIDUE PRO A 601
2	AC2	SOFTWARE	PHE A:210 , ILE A:392 , ASP A:393 , LYS A:395 , ALA A:396 , ARG A:399 , HOH A:867	BINDING SITE FOR RESIDUE PRO A 602
3	AC3	SOFTWARE	SER A:41 , GLN A:42 , GLY A:43 , SER A:44 , PRO A:45 , GLN A:184 , PRO A:185 , ILE A:186 , HOH A:758 , HOH A:930 , HOH A:967 , HOH A:1062	BINDING SITE FOR RESIDUE PRO A 603
4	AC4	SOFTWARE	CYS A:348 , SER A:349 , THR A:511 , GLY A:512 , SER A:513 , PHE A:520 , HOH A:855 , HOH A:860 , HOH A:1127	BINDING SITE FOR RESIDUE PRO A 604
5	AC5	SOFTWARE	THR A:61 , TRP A:74 , TYR A:80 , LYS A:93 , PGE A:606 , THR B:61 , LYS B:90 , LYS B:93	BINDING SITE FOR RESIDUE 16P A 605
6	AC6	SOFTWARE	16P A:605 , LYS B:93	BINDING SITE FOR RESIDUE PGE A 606
7	AC7	SOFTWARE	LYS A:292 , ALA A:525 , LEU B:302 , ASP B:303 , PHE B:305	BINDING SITE FOR RESIDUE PRO B 601
8	AC8	SOFTWARE	PHE B:210 , ILE B:392 , ASP B:393 , LYS B:395 , ALA B:396 , ARG B:399	BINDING SITE FOR RESIDUE PRO B 602
9	AC9	SOFTWARE	GLU B:165 , PHE B:212 , CYS B:348 , SER B:349 , THR B:511 , GLY B:512 , SER B:513 , PHE B:520 , HOH B:838 , HOH B:839	BINDING SITE FOR RESIDUE PRO B 603

(no "SS Bond" information available for 4E3X)

Asymmetric/Biological Unit

No.	Residues
1	Pro A:189	-	Pro A:190
2	Pro B:189	-	Pro B:190

(no "SAP(SNP)/Variant" information available for 4E3X)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDEHYDE_DEHYDR_GLU	PS00687	Aldehyde dehydrogenases glutamic acid active site.	AL4A1_MOUSE	312-319	2	A:313-320 B:313-320
2	ALDEHYDE_DEHYDR_CYS	PS00070	Aldehyde dehydrogenases cysteine active site.	AL4A1_MOUSE	340-351	2	A:341-352 B:341-352

Asymmetric/Biological Unit (15, 30)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENSMUST00000039818	1a	ENSMUSE00000802869	chr4:139178781-139179112	332	AL4A1_MOUSE	1-20	20	2	A:20-21 B:18-21	2 4
1.2a	ENSMUST00000039818	2a	ENSMUSE00000340055	chr4:139189630-139189723	94	AL4A1_MOUSE	20-51	32	2	A:21-52 B:21-52	32 32
1.2c	ENSMUST00000039818	2c	ENSMUSE00000280876	chr4:139189812-139189904	93	AL4A1_MOUSE	52-82	31	2	A:53-83 B:53-83	31 31
1.3	ENSMUST00000039818	3	ENSMUSE00000280869	chr4:139190579-139190626	48	AL4A1_MOUSE	83-98	16	2	A:84-99 B:84-99	16 16
1.4a	ENSMUST00000039818	4a	ENSMUSE00000280862	chr4:139191304-139191459	156	AL4A1_MOUSE	99-150	52	2	A:100-151 B:100-151	52 52
1.5	ENSMUST00000039818	5	ENSMUSE00000181719	chr4:139192874-139193023	150	AL4A1_MOUSE	151-200	50	2	A:152-201 B:152-201	50 50
1.6	ENSMUST00000039818	6	ENSMUSE00000181717	chr4:139193101-139193175	75	AL4A1_MOUSE	201-225	25	2	A:202-226 B:202-226	25 25
1.7	ENSMUST00000039818	7	ENSMUSE00000181716	chr4:139194290-139194477	188	AL4A1_MOUSE	226-288	63	2	A:227-289 B:227-289	63 63
1.8a	ENSMUST00000039818	8a	ENSMUSE00000280831	chr4:139196528-139196601	74	AL4A1_MOUSE	288-313	26	2	A:289-314 B:289-314	26 26
1.8c	ENSMUST00000039818	8c	ENSMUSE00000343113	chr4:139197992-139198188	197	AL4A1_MOUSE	313-378	66	2	A:314-379 B:314-379	66 66
1.9	ENSMUST00000039818	9	ENSMUSE00000383610	chr4:139198429-139198476	48	AL4A1_MOUSE	379-394	16	2	A:380-395 B:380-395	16 16
1.10	ENSMUST00000039818	10	ENSMUSE00000345564	chr4:139199305-139199457	153	AL4A1_MOUSE	395-445	51	2	A:396-446 B:396-446	51 51
1.11	ENSMUST00000039818	11	ENSMUSE00000346494	chr4:139200027-139200148	122	AL4A1_MOUSE	446-486	41	2	A:447-487 B:447-487	41 41
1.12	ENSMUST00000039818	12	ENSMUSE00000181721	chr4:139200894-139201012	119	AL4A1_MOUSE	486-526	41	2	A:487-527 B:487-527	41 41
1.13b	ENSMUST00000039818	13b	ENSMUSE00000332832	chr4:139204073-139205605	1533	AL4A1_MOUSE	526-562	37	2	A:527-562 B:527-563	36 37

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:547
 aligned with AL4A1_MOUSE | Q8CHT0 from UniProtKB/Swiss-Prot  Length:562

    Alignment length:548
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         562    
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558   |    
          AL4A1_MOUSE    19 AGLRWKHTSSLKVTNEPILAFSQGSPERDALQKALKDLKGQMEAIPCVVGDEEVWTSDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLQLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWRYSYMQ----   -
               SCOP domains d4e3xa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhhhh.....ee..eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee......eeeee....hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh......eee...hhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhhh........eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeeee...ee.....ee..eeeee....hhhhh......eeeeeeehhhhhhhhhhhhhhh..ee.eeeee..hhhhhhhhhhhh.....eeee................ee...........hhhhhhh..eeeeee............-.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.-------------------------------Exon 1.2c  PDB: A:53-83        Exon 1.3        Exon 1.4a  PDB: A:100-151 UniProt: 99-150           Exon 1.5  PDB: A:152-201 UniProt: 151-200         Exon 1.6  PDB: A:202-226 Exon 1.7  PDB: A:227-289 UniProt: 226-288                      ------------------------Exon 1.8c  PDB: A:314-379 UniProt: 313-378                        Exon 1.9        Exon 1.10  PDB: A:396-446 UniProt: 395-445         Exon 1.11  PDB: A:447-487                ---------------------------------------Exon 1.13b  PDB: A:527-562           ---- Transcript 1 (1)
           Transcript 1 (2) -Exon 1.2a  PDB: A:21-52         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.8a  PDB: A:289-314 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: A:487-527                ---------------------------------------- Transcript 1 (2)
                 4e3x A  20 HMLRWKHTSSLKVANEPILAFSQGSPERDALQKALKDLKGQTEAIPCVVGDEEVWTSDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWRYSYM-PPPP 604
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559  | |   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        562 |   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          601

Chain B from PDB  Type:PROTEIN  Length:549
 aligned with AL4A1_MOUSE | Q8CHT0 from UniProtKB/Swiss-Prot  Length:562

    Alignment length:549
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           562   
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556     |   
          AL4A1_MOUSE    17 RGAGLRWKHTSSLKVTNEPILAFSQGSPERDALQKALKDLKGQMEAIPCVVGDEEVWTSDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLQLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWRYSYMQ---   -
               SCOP domains d4e3xb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................hhhhhhhhhhhhh.....ee..eee..eee....eeeeee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeee...eeeee....hhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh......eee...hhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhh........eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh..eeeee...ee.....ee..eeeee....hhhhh......eeeeeeehhhhhhhhhhhhhhh..ee.eeeee..hhhhhhhhhhhh.....eeee................ee...........hhhhh.eeeeeeeee........hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1a-------------------------------Exon 1.2c  PDB: B:53-83        Exon 1.3        Exon 1.4a  PDB: B:100-151 UniProt: 99-150           Exon 1.5  PDB: B:152-201 UniProt: 151-200         Exon 1.6  PDB: B:202-226 Exon 1.7  PDB: B:227-289 UniProt: 226-288                      ------------------------Exon 1.8c  PDB: B:314-379 UniProt: 313-378                        Exon 1.9        Exon 1.10  PDB: B:396-446 UniProt: 395-445         Exon 1.11  PDB: B:447-487                ---------------------------------------Exon 1.13b  PDB: B:527-563           --- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.2a  PDB: B:21-52         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.8a  PDB: B:289-314 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: B:487-527                --------------------------------------- Transcript 1 (2)
                 4e3x B  18 GSHMLRWKHTSSLKVANEPILAFSQGSPERDALQKALKDLKGQTEAIPCVVGDEEVWTSDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGAPALMGNVVLWKPSDTAMLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTNDKPGGPHYILRWTSPQVIKETHKPLGDWRYSYMQPPP 603
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557     ||  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           563|  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            601

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: ALDH-like (168)

Superfamily: ALDH-like (168)

Family: automated matches (88)

Protein domain: automated matches (88)

Mouse (Mus musculus) [TaxId: 10090] (9)

1a	d4e3xa_	A:
1b	d4e3xb_	B:

(no "CATH Domain" information available for 4E3X)

(no "Pfam Domain" information available for 4E3X)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (AL4A1_MOUSE | Q8CHT0)

molecular function
	GO:0003842	1-pyrroline-5-carboxylate dehydrogenase activity	Catalysis of the reaction: 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH + H(+).
	GO:0004029	aldehyde dehydrogenase (NAD) activity	Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0006537	glutamate biosynthetic process	The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006561	proline biosynthetic process	The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
	GO:0010133	proline catabolic process to glutamate	The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including glutamate.
	GO:0006560	proline metabolic process	The chemical reactions and pathways involving proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
cellular component
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Pro A:189 - Pro A:190	[ RasMol ]
		Pro B:189 - Pro B:190	[ RasMol ]

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	4e3x
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	1.5.1.12
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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	AL4A1_MOUSE \| Q8CHT0	:	3v9j 3v9k 3v9l 4lgz 4lh0 4lh1 4lh2 4lh3

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (15, 30)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File