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(-) Description

Title :  LYTR-CPS2A-PSR FAMILY PROTEIN WITH BOUND OCTAPRENYL MONOPHOSPHATE LIPID
 
Authors :  A. Eberhardt, C. N. Hoyland, D. V. Vollmer, S. Bisle, R. M. Cleverley, O. Johnsborg, L. S. Havarstein, R. J. Lewis, W. Vollmer
Date :  20 Jan 12  (Deposition) - 04 Apr 12  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Possible Wall Techoic Acid Synthesis, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Eberhardt, C. N. Hoyland, D. Vollmer, S. Bisle, R. M. Cleverley, O. Johnsborg, L. S. Havarstein, R. J. Lewis, W. Vollmer
Attachment Of Capsular Polysaccharide To The Cell Wall In Streptococcus Pneumoniae.
Microb Drug Resist V. 18 240 2012
PubMed-ID: 22432711  |  Reference-DOI: 10.1089/MDR.2011.0232

(-) Compounds

Molecule 1 - CPS2A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 98-481
    Gene: CPS2A, SPD_0315
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 373153
    Strain: D39 / NCTC 7466
    Synonym: INTEGRAL MEMBRANE REGULATORY PROTEIN CPS2A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
10K31Ligand/Ion(2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAEN-1-YL DIHYDROGEN PHOSPHATE
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:234 , VAL A:247 , MET A:251 , LEU A:313 , ASN A:314 , PHE A:315 , ARG A:362 , ARG A:374 , GLN A:378 , LEU A:386 , LEU A:389 , LEU A:395 , MET A:418 , LEU A:421 , TYR A:432 , HOH A:649BINDING SITE FOR RESIDUE 0K3 A 501
2AC2SOFTWARETYR A:196 , ASP A:454BINDING SITE FOR RESIDUE PEG A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DE8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DE8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DE8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DE8)

(-) Exons   (0, 0)

(no "Exon" information available for 4DE8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
 aligned with Q9ZII9_STRP2 | Q9ZII9 from UniProtKB/TrEMBL  Length:481

    Alignment length:374
                                                                                                                                                                                                                                                                                                                                                                                                            481   
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480|   
         Q9ZII9_STRP2   111 EYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMINLVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEGR---   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee......hhhhh.eeee....hhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhh.....eeeehhhhhhhhhhh.hhhhheeeeeeeee.............eeeeeeeee...........eeeeeeeeee....eeeeee.....eeeehhhhh.eeee..hhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh.eeeee...eee....eee..eeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhh...eeeeee..eeee..............eeeehhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4de8 A 111 EYSLSVAVLADSEIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIELEYPDYASKIKKIYTKGFTKKVEAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPADAYVPIADGGNNQKDKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALHGKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEALKNYSTIINSLQDSIQTNVPLETMINLVNAQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLYVMEIDDSSLAVVKAAIQDVMEGRKLA 484
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DE8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DE8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DE8)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9ZII9_STRP2 | Q9ZII9)
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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UniProtKB/TrEMBL
        Q9ZII9_STRP2 | Q9ZII9: 2xxp 2xxq

(-) Related Entries Specified in the PDB File

4de9