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(-) Description

Title :  STRUCTURE OF THE VIRULENCE-ASSOCIATED PROTEIN VAPD FROM THE INTRACELLULAR PATHOGEN RHODOCOCCUS EQUI.
 
Authors :  J. L. Whittingham, E. V. Blagova, C. E. Finn, H. Luo, R. Miranda-Casolue J. P. Turkenburg, A. P. Leech, P. H. Walton, W. G. Meijers, A. J. Wilkins
Date :  06 Mar 14  (Deposition) - 16 Apr 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Unknown-Function, Bacterial Pathogen, Virulence Protein, Beta Barrel (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Whittingham, E. V. Blagova, C. E. Finn, H. Luo, R. Miranda-Casoluengo, J. P. Turkenburg, A. P. Leech, P. H. Walton, A. G. Murzin, W. G. Meijer, A. J. Wilkinson
Structure Of The Virulence-Associated Protein Vapd From The Intracellular Pathogen Rhodococcus Equi.
Acta Crystallogr. , Sect. D V. 70 2139 2014
PubMed-ID: 25084333  |  Reference-DOI: 10.1107/S1399004714012632

(-) Compounds

Molecule 1 - VIRULENCE ASSOCIATED PROTEIN VAPD
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: RHODOCOCCUS EQUI
    Organism Taxid: 685727
    Strain: 103S
    Synonym: VIRULENCE-ASSOCIATED PROTEIN D

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1BOG3Ligand/IonB-OCTYLGLUCOSIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:60 , GLN A:92 , ARG A:111 , GLY A:128 , THR A:130 , HOH A:2057 , HOH A:2059BINDING SITE FOR RESIDUE BOG A1135
2AC2SOFTWAREVAL A:89 , SER A:90 , PHE A:91 , PHE A:105 , ASP A:106 , SER A:107 , GLY A:109 , GLU A:110 , HOH A:2051 , HOH A:2060BINDING SITE FOR RESIDUE BOG A1136
3AC3SOFTWARETRP A:73BINDING SITE FOR RESIDUE BOG A1137

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CSB)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:113
 aligned with B4F3C5_RHOE1 | B4F3C5 from UniProtKB/TrEMBL  Length:164

    Alignment length:113
                                    61        71        81        91       101       111       121       131       141       151       161   
         B4F3C5_RHOE1    52 PEDKEYDVSGRVVSALVYQYFIVTVDDAEDKKGKTFQGDAGGVTIPGVDFFWGTLHTPDLEKLYSDTVSFQYNAAATFLNINFFDSKGERLGYVLAGAAGTVSGIGGGTGGWE 164
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee...eeeeeeeeee.......eeeeeeeeee..eeeeeeeeeee.hhhhhhhhh.eeeeeee..eeeeeee.....eeeeeeeee.....eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4csb A  22 PEDKEYDVSGRVVSALVYQYFIVTVDDAEDKKGKTFQGDAGGVTIPGVDFFWGTLHTPDLEKLYSDTVSFQYNAAATFLNINFFDSKGERLGYVLAGAAGTVSGIGGGTGGWE 134
                                    31        41        51        61        71        81        91       101       111       121       131
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 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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