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(-) Description

Title :  CRYSTAL STRUCTURE OF MN-BOUND S.PYOGENES CAS9
 
Authors :  M. Jinek, F. Jiang, D. W. Taylor, S. H. Sternberg, E. Kaya, E. Ma, C. Ander M. Hauer, K. Zhou, S. Lin, M. Kaplan, A. T. Iavarone, E. Charpentier, E. J. A. Doudna
Date :  17 Jan 14  (Deposition) - 12 Feb 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.09
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Dnase, Endonuclease, Rna-Guided, Immunity, Crrna, Genome Editing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jinek, F. Jiang, D. W. Taylor, S. H. Sternberg, E. Kaya, E. Ma, C. Anders, M. Hauer, K. Zhou, S. Lin, M. Kaplan, A. T. Iavarone, E. Charpentier, E. Nogales, J. A. Doudna
Structures Of Cas9 Endonucleases Reveal Rna- Mediated Conformational Activation
Science V. 343 47997 2014
PubMed-ID: 24505130  |  Reference-DOI: 10.1126/SCIENCE.1247997

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1
    Chains: A, B
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEC-K-MBP
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 301447
    Strain: SEROTYPE M1
    Synonym: CAS9

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric Unit (2, 19)
No.NameCountTypeFull Name
1MN13Ligand/IonMANGANESE (II) ION
2SO46Ligand/IonSULFATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2SO43Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:10 , GLU A:766 , HIS A:983BINDING SITE FOR RESIDUE MN A2364
02AC2SOFTWAREASP A:10 , GLU A:762 , GLU A:766BINDING SITE FOR RESIDUE MN A2365
03AC3SOFTWAREHIS A:511 , GLU A:516BINDING SITE FOR RESIDUE MN A2366
04AC4SOFTWAREHIS A:1241BINDING SITE FOR RESIDUE MN A2367
05AC5SOFTWAREARG A:653 , HIS A:1297 , ASP A:1328BINDING SITE FOR RESIDUE MN A2368
06AC6SOFTWAREHIS A:1311BINDING SITE FOR RESIDUE MN A2369
07AC7SOFTWAREHIS A:799 , GLU A:827BINDING SITE FOR RESIDUE MN A2370
08AC8SOFTWAREASP B:10 , GLU B:766 , HIS B:983BINDING SITE FOR RESIDUE MN B2364
09AC9SOFTWAREASP B:10 , GLU B:762 , GLU B:766BINDING SITE FOR RESIDUE MN B2365
10BC1SOFTWARELEU B:380 , THR B:386BINDING SITE FOR RESIDUE MN B2366
11BC2SOFTWAREHIS B:511 , GLU B:516BINDING SITE FOR RESIDUE MN B2367
12BC3SOFTWAREHIS B:754BINDING SITE FOR RESIDUE MN B2368
13BC4SOFTWAREHIS B:1311BINDING SITE FOR RESIDUE MN B2369
14BC5SOFTWAREARG B:71 , ARG B:74 , ARG B:75 , ARG B:78 , ARG B:165BINDING SITE FOR RESIDUE SO4 B2370
15BC6SOFTWAREARG A:74 , ARG A:75 , ARG A:78 , ARG A:165BINDING SITE FOR RESIDUE SO4 A2371
16BC7SOFTWARETYR B:325 , HIS B:328 , HIS B:329 , ARG B:403BINDING SITE FOR RESIDUE SO4 B2371
17BC8SOFTWARETYR A:325 , HIS A:328 , HIS A:329 , ARG A:403BINDING SITE FOR RESIDUE SO4 A2372
18BC9SOFTWAREGLY B:1209 , LYS B:1211 , ASN B:1224 , GLU B:1225BINDING SITE FOR RESIDUE SO4 B2372
19CC1SOFTWAREGLY A:1209 , LYS A:1211 , ASN A:1224 , ARG A:1279BINDING SITE FOR RESIDUE SO4 A2373

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CMQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CMQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CMQ)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HNH_CAS9PS51749 Cas9-type HNH domain profile.CAS9_STRP1770-921
 		  2A:774-921
B:775-921
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HNH_CAS9PS51749 Cas9-type HNH domain profile.CAS9_STRP1770-921
 		  1A:774-921
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HNH_CAS9PS51749 Cas9-type HNH domain profile.CAS9_STRP1770-921
 		  1-
B:775-921

(-) Exons   (0, 0)

(no "Exon" information available for 4CMQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1156
 aligned with CAS9_STRP1 | Q99ZW2 from UniProtKB/Swiss-Prot  Length:1368

    Alignment length:1360
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363
          CAS9_STRP1      4 KYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLS 1363
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeeee.......eeeee........eeeee.eeeee.....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.------------......hhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhh...hhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhh............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.....hhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhh...............hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.-------------------------------------------------------.........hhhhhhhhhhhhhh.......------..hhhhhhhhhhhh.......hhhhhhhhhhh--------............hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhh........hhhhhhh...----.hhhhhhh------.hhhhhhhh...hhhhhhhhhh..---hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh......eeeeee...-------hhhhhhhhhhhhhhhhh.-------...hhhhhhhhhhhhhhhh..............------.ee..............ee...---............hhhhhhhhhhhhhhh...hhhhhhhhh.-----.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.............eeee.hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhh....---------.....hhhhhhh.eee.....eee...eee......eeee..hhhhhhhhhhhh...eeee......----------------------------------..eeeeeee.------------...eeeeeehhhhhhhhhhhhhhhhhhh-----....eee...eeeee...eeeeeee..eeee......hhhhhhhhhhhhh.----------------hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh......eee..eee.......hhhhhh.eeee........eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HNH_CAS9  PDB: A:774-921 UniProt: 770-921                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cmq A    4 KYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLE------------RHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILR------KAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFR-------------------------------------------------------PNEKVLPKHSLLYEYFTVYNELTKVKYVTE------FLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFK--------EISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRD----KTILDFLK------RNFMQLIHDDSLTFKEDIQKAQVS---DSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARE-------QKNSRERMKRIEEGIKEL-------HPVENTQLQNEKLYLYYLQNGRDMYVDQELDIN------VDHIVPQSFLKDDSIDNKVLTR---NRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTK-----LSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSE---------YFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQT----------------------------------PTVAYSVLVV------------SVKELLGITIMERSSFEKNPIDFLEAKG-----KDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHY----------------VEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLS 1363
                                    13        23        33        43        53        63        73        83        93        |-         - |     123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303   |     -|      323       333       343       353       363       373       383       393       403       413       423       433       443   |     -         -         -         -         -       503       513       523        |-     | 543       553       563      |  -     | 583       593       603       613       623       633       643       653       663        |-   |   683|      693       703       713|   |  723       733       743       753       763  |      -|      783       | -     | 803       813       823       | -    |  843       853     | 863       873       883       893        |-    |  913       923       933       943       953       963       973       983       993      1003      1013      1023  |      -  |   1043      1053      1063      1073      1083      1093        |-         -         -         -   |  1143  |      -     |1163      1173      1183  |   1193      1203      1213      1223      1233        |-         -     |1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363
                                                                                                                            102          115                                                                                                                                                                                             307    314                                                                                                                                  447                                                     503                          532    539                            570      579                                                                                          672  677    684    691                    714 718                                             766     774              791     799                             831    838                  859 863                                    902   908                                                                                                                  1026      1036                                                              1102                               1137     1146         1159                       1186  1192                                              1242             1259                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:1168
 aligned with CAS9_STRP1 | Q99ZW2 from UniProtKB/Swiss-Prot  Length:1368

    Alignment length:1360
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363
          CAS9_STRP1      4 KYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLS 1363
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeeee.......eeeee........eeeee.eeeee.....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..------------.....hhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhh...hhhhhhhhhhh........hhhhhhhhhhhh......................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.-.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhh..........-....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.------------------------------------------------------..........hhhhhhhhhhhhhhh.....-------..hhhhhhhhhhhh.......hhhhhhhhhhh----------------....hhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhh........hhhhhh.....--..hhhhhhhh......hhhhhhh....hhhhhhhhhhh----hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh......eeeee....--------hhhhhhhhhhhhhhhhh------......hhhhhhhhhhhhhh..................--.ee..............ee...---............hhhhhhhhhhhhhhh...hhhhhhhhhh-----.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.............eeee.hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhh...----------.....hhhhhhh.eee.....eee...eee......eeee..hhhhhhhhhhhh...eeee......----------------------------------..eeeeeeee..-----------.eeeeeeehhhhhhhhhhhhhhhhh.---.......eee...eeeee...eeeeeee..eeee......hhhhhhhhhhhhh-------------.hhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.......eee..eee.......hhhhhh.eeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HNH_CAS9  PDB: B:775-921 UniProt: 770-921                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cmq B    4 KYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEE------------HPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRV-TEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTF-NGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFR------------------------------------------------------LPNEKVLPKHSLLYEYFTVYNELTKVKYVT-------FLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFK----------------FNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDK--GKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQV----DSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARE--------KNSRERMKRIEEGIKEL------EHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSD--VDHIVPQSFLKDDSIDNKVLTR---NRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTK-----LSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKS----------YFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQT----------------------------------PTVAYSVLVVAK-----------VKELLGITIMERSSFEKNPIDFLEAK---EVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASH-------------KQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLS 1363
                                    13        23        33        43        53        63        73        83        93       103         -  |    123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303    | |313       323       333       343       353       363       373       383       393       403 | |   413       423       433       443   |     -         -         -         -         -       503       513       523       | -     | 543       553       563      |  -         -   |   593       603       613       623       633       643       653       663       673  |    683       693       703       713    |  723       733       743       753       763  |      - |     783       | -    |  803       813       823       833 |  |  843       853     | 863       873       883       893        |-    |  913       923       933       943       953       963       973       983       993      1003      1013      1023 |       -  |   1043      1053      1063      1073      1083      1093        |-         -         -         -   |  1143    |    -      1163      1173      1183 |   |1193      1203      1213      1223      1233       | -         - |    1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363
                                                                                                                             103          116                                                                                                                                                                                             308 |                                                                                            405 |                                     447                                                    502                          531     539                            570              587                                                                                   673  |                                  713  718                                             766      775             791    798                                  835  |                  859 863                                    902   908                                                                                                                 1025       1036                                                              1102                               1137       1148        1160                     1185   |                                                1241          1255                                                                                                            
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   Legend:   → Mismatch (orange background)
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(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (CAS9_STRP1 | Q99ZW2)
molecular function
    GO:0008408    3'-5' exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0004520    endodeoxyribonuclease activity    Catalysis of the hydrolysis of ester linkages within deoxyribonucleic acid by creating internal breaks.
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004518    nuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids.
biological process
    GO:0051607    defense response to virus    Reactions triggered in response to the presence of a virus that act to protect the cell or organism.
    GO:0043571    maintenance of CRISPR repeat elements    Any process involved in sustaining CRISPR repeat clusters, including capture of new spacer elements, expansion or contraction of clusters, propagation of the leader sequence and repeat clusters within a genome, transfer of repeat clusters and CRISPR-associated (cas) genes to new genomes, transcription of the CRISPR repeat arrays into RNA and processing, and interaction of CRISPR/cas loci with the host genome. CRISPR (clustered regularly interspaced short palindromic repeat) elements are a family of sequence elements containing multiple direct repeats of 24-48 bp with weak dyad symmetry which are separated by regularly sized nonrepetitive spacer sequences.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAS9_STRP1 | Q99ZW2: 4cmp 4oo8 4un3 4un4 4un5 4zt0 4zt9 5b2r 5b2s 5b2t 5f9r 5fq5 5fw1 5fw2 5fw3 5vw1 5xbl

(-) Related Entries Specified in the PDB File

4cmp CRYSTAL STRUCTURE OF S. PYOGENES CAS9