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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH N-(4-CHLOROBENZYL)-3-(2-FURYL)-1H-1,2,4-TRIAZOL-5-AMINE
 
Authors :  L. Moynie, S. A. Mcmahon, F. G. Duthie, J. H. Naismith
Date :  13 Jan 14  (Deposition) - 21 Jan 15  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  E  (2x)
Biol. Unit 3:  C,D  (1x)
Keywords :  Lyase, Fatty Acid Biosynthesis, Bacterial Virulence, Drug Discovery (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Moynie, A. G. Hope, K. Finzel, J. Schmidberger, S. M. Leckie, G. Schneider, M. D. Burkart, A. D. Smith, D. W. Gray, J. H. Naismith
A Substrate Mimic Allows High Throughput Assay Of The Faba Protein And Consequently The Identification Of A Novel Inhibitor Of Pseudomonas Aeruginosa Faba.
J. Mol. Biol. V. 428 108 2016
PubMed-ID: 26562505  |  Reference-DOI: 10.1016/J.JMB.2015.10.027

(-) Compounds

Molecule 1 - 3-HYDROXYDECANOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE
    Chains: A, B, C, D, E
    EC Number: 4.2.1.59, 5.3.3.14, 4.2.1.60
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: TUNER
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964
    Synonym: 3-HYDROXYDECANOYL-ACYL-CARRIER-PROTEIN DEHYDRATASE, 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABA, BETA-HYDROXYDECANOYL THIOESTER DEHYDRASE, TRANS-2-DECENOYL-[ACYL-CARRIER-PROTEIN] ISOMERASE

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): AB   
Biological Unit 2 (2x):     E
Biological Unit 3 (1x):   CD 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
17SB5Ligand/IonN-(4-CHLOROBENZYL)-5-(FURAN-2-YL)-1H-1,2,4-TRIAZOL-3-AMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
17SB2Ligand/IonN-(4-CHLOROBENZYL)-5-(FURAN-2-YL)-1H-1,2,4-TRIAZOL-3-AMINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
17SB2Ligand/IonN-(4-CHLOROBENZYL)-5-(FURAN-2-YL)-1H-1,2,4-TRIAZOL-3-AMINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
17SB2Ligand/IonN-(4-CHLOROBENZYL)-5-(FURAN-2-YL)-1H-1,2,4-TRIAZOL-3-AMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:70 , PHE A:71 , GLY A:79 , GLY A:115 , HOH A:2046 , GLN B:27 , LEU B:28 , TRP B:87 , GLN B:88 , GLY B:91 , PHE B:92 , GLY B:103 , ARG B:104 , ALA B:105BINDING SITE FOR RESIDUE 7SB A 501
2AC2SOFTWAREGLN A:27 , LEU A:28 , TRP A:87 , GLN A:88 , GLY A:91 , PHE A:92 , GLY A:103 , ARG A:104 , ALA A:105 , HOH A:2047 , HOH A:2048 , HIS B:70 , PHE B:71 , GLY B:79 , GLY B:115BINDING SITE FOR RESIDUE 7SB B 501
3AC3SOFTWAREHIS C:70 , PHE C:71 , MET C:77 , GLY C:79 , GLY C:115 , HOH C:2029 , HOH C:2034 , GLN D:27 , LEU D:28 , TRP D:87 , GLN D:88 , GLY D:91 , PHE D:92 , GLY D:103 , ARG D:104 , ALA D:105BINDING SITE FOR RESIDUE 7SB C 501
4AC4SOFTWAREGLN C:27 , LEU C:28 , TRP C:87 , GLN C:88 , GLY C:91 , PHE C:92 , GLY C:103 , ARG C:104 , ALA C:105 , PHE C:171 , HOH C:2035 , HIS D:70 , PHE D:71 , MET D:77 , GLY D:79 , GLY D:115BINDING SITE FOR RESIDUE 7SB D 501
5AC5SOFTWAREGLN E:27 , LEU E:28 , HIS E:70 , PHE E:71 , MET E:77 , GLY E:79 , TRP E:87 , GLN E:88 , GLY E:91 , PHE E:92 , GLY E:103 , ARG E:104 , ALA E:105 , GLY E:115 , PHE E:171 , HOH E:2030BINDING SITE FOR RESIDUE 7SB E 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CL6)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Pro A:31 -Asn A:32
2His A:70 -Phe A:71
3Pro B:31 -Asn B:32
4His B:70 -Phe B:71
5Pro C:31 -Asn C:32
6His C:70 -Phe C:71
7Pro D:31 -Asn D:32
8His D:70 -Phe D:71
9Pro E:31 -Asn E:32
10His E:70 -Phe E:71

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CL6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CL6)

(-) Exons   (0, 0)

(no "Exon" information available for 4CL6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhh....................eeeeee.........eeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeeee..............eeeeeeeeeeee..eeeeeeeeeee..eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cl6 A   2 TKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131   ||  143       153       163        
                                                                                                                                                               135|                                 
                                                                                                                                                                138                                 


Chain B from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh...............................................hhhhhh.......hhhhhhhhhhhhhhhhhhhh.............eee......................................eeeeeeeeeeeeee.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cl6 B   2 TKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain C from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh....................eeeeee.........eeeeeee.....hhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeeee..............eeeeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cl6 C   1 MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 


Chain D from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh..............................................hhhhhhh.......hhhhhhhhhhhhhhhhhhhh.............eee......................................eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cl6 D   2 TKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain E from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh....................eeeeee.........eeeeeee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeee...eee.........eeeeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cl6 E   2 TKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CL6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CL6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CL6)

(-) Gene Ontology  (11, 11)

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        FABA_PSEAE | O33877: 4b0b 4b0c 4b0i 4b0j 4b8u 4fq9

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