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(-) Description

Title :  STRUCTURE OF PERIPLASMIC METAL BINDING PROTEIN FROM CANDIDATUS LIBERIBACTER ASIATICUS
 
Authors :  N. Sharma, P. Selvakumar, S. Bhose, D. K. Ghosh, P. Kumar, A. K. Sharma
Date :  11 Jan 14  (Deposition) - 28 Jan 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A
Keywords :  Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sharma, P. Selvakumar, S. Bhose, D. K. Ghosh, P. Kumar, A. K. Sharma
Crystal Structure Of A Periplasmic Solute Binding Protein In Metal-Free, Intermediate And Metal-Bound States From Candidatus Liberibacter Asiaticus.
J. Struct. Biol. V. 189 184 2015
PubMed-ID: 25641618  |  Reference-DOI: 10.1016/J.JSB.2015.01.012

(-) Compounds

Molecule 1 - PERIPLASMIC SOLUTE BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET28C
    Expression System Vector Type: PLASMID
    Organism Scientific: CANDIDATUS LIBERIBACTER ASIATICUS
    Organism Taxid: 537021
    Strain: PSY62

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MN1Ligand/IonMANGANESE (II) ION
4SO46Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:28 , THR A:29 , THR A:30 , GLU A:33 , LYS A:50 , HOH A:2040 , HOH A:2041 , HOH A:2049 , HOH A:2257 , HOH A:2258BINDING SITE FOR RESIDUE SO4 A1276
02AC2SOFTWARETHR A:44 , SER A:45 , HOH A:2068 , HOH A:2244 , HOH A:2245 , HOH A:2251 , HOH A:2259BINDING SITE FOR RESIDUE SO4 A1277
03AC3SOFTWARETHR A:44 , ALA A:46 , HOH A:2063 , HOH A:2068BINDING SITE FOR RESIDUE SO4 A1278
04AC4SOFTWARESER A:150 , ARG A:264 , HOH A:2186 , HOH A:2189 , HOH A:2260BINDING SITE FOR RESIDUE SO4 A1279
05AC5SOFTWARETYR A:245 , SER A:250 , LYS A:251 , HOH A:2053BINDING SITE FOR RESIDUE SO4 A1280
06AC6SOFTWAREASN A:36 , HOH A:2046 , HOH A:2261BINDING SITE FOR RESIDUE SO4 A1281
07AC7SOFTWARELYS A:70 , HOH A:2262BINDING SITE FOR RESIDUE ACT A1282
08AC8SOFTWARETHR A:73 , ASN A:74 , TYR A:245 , PHE A:265 , HOH A:2076 , HOH A:2100 , HOH A:2262BINDING SITE FOR RESIDUE ACT A1283
09AC9SOFTWARESER A:199 , PRO A:200 , SER A:201 , ARG A:204 , ASN A:237BINDING SITE FOR RESIDUE GOL A1284
10BC1SOFTWAREHIS A:205 , ASN A:208 , GLN A:209BINDING SITE FOR RESIDUE GOL A1285
11BC2SOFTWAREHIS A:106 , GLU A:172 , ASP A:247BINDING SITE FOR RESIDUE MN A1286

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CL2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CL2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CL2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CL2)

(-) Exons   (0, 0)

(no "Exon" information available for 4CL2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhh...eeeeee...........hhhhhhhhhhh.eeee........hhhhh.......eeee.....................hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhh.eeeeee..hhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh.eeeeee.............hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cl2 A   4 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSESEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSRSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTLF 275
                                    13        23        33        43        53        63        73        83        93 ||    108       118       128       138       148       158       168       178       188     ||201       211       221       231       241       251       261       271    
                                                                                                                      95|                                                                                          194|                                                                             
                                                                                                                      101                                                                                           198
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CL2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CL2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CL2)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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        C6XF58_LIBAP | C6XF58: 4udn 4udo 5afs

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