4C9C - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) FRA A 1E PROTEIN (FORM A)

Authors :   A. Casanal, U. Zander, V. Valpuesta, J. A. Marquez

Date :   02 Oct 13 (Deposition) - 16 Oct 13 (Release) - 25 Dec 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Start, Pyr/Pyl/Rcar, Allergen, Bet V 1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Casanal, U. Zander, C. Munoz, F. Dupeux, I. Luque, M. A. Botella, W. Schwab, V. Valpuesta, J. A. Marquez
The Strawberry Pathogenesis-Related 10 (Pr-10) Fra A Proteins Control Flavonoid Biosynthesis By Binding To Metabolic Intermediates.
J. Biol. Chem. V. 288 35322 2013
PubMed-ID: 24133217 | Reference-DOI: 10.1074/JBC.M113.501528
(for further references see the PDB file header)

Molecule 1 - MAJOR STRAWBERRY ALLERGEN FRA A 1-E
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PETM11
	Expression System Vector Type	:	PLASMID
	Organism Common	:	STRAWBERRY
	Organism Scientific	:	FRAGARIA X ANANASSA
	Organism Taxid	:	3747
	Synonym	:	FRA A 1E

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:154 , HIS A:155 , PRO A:156 , SER A:157 , HOH A:2083 , ASP B:154 , HIS B:155 , PRO B:156 , SER B:157 , HOH B:2064	BINDING SITE FOR RESIDUE SO4 B1161
2	AC2	SOFTWARE	ASP A:13 , LYS A:56 , TYR A:67 , LYS A:69 , LYS A:153	BINDING SITE FOR RESIDUE SO4 A1161
3	AC3	SOFTWARE	ASP A:154 , LYS B:33 , TYR B:151 , GLU B:158 , HOH B:2064 , HOH B:2071	BINDING SITE FOR RESIDUE GOL B1162
4	AC4	SOFTWARE	VAL B:24 , ALA B:27 , LYS B:55 , HIS B:70	BINDING SITE FOR RESIDUE GOL B1163

(no "SS Bond" information available for 4C9C)

(no "Cis Peptide Bond" information available for 4C9C)

(no "SAP(SNP)/Variant" information available for 4C9C)

(no "PROSITE Motif" information available for 4C9C)

(no "Exon" information available for 4C9C)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:158
 aligned with Q256S2_FRAAN | Q256S2 from UniProtKB/TrEMBL  Length:160

    Alignment length:162
                              1                                                                                                                                                               
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158  
         Q256S2_FRAAN     - --MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFGEGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEYN 160
               SCOP domains d4c9ca_ A: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..hhhhhhhhhh.hhhhhhhhhh.....eeeeee.......eeeeee.----.eeeeeeeeeee....eeeeeeee.......eeeeeeeeeeee.....eeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4c9c A  -1 AMAGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG----YGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEYN 160
                                     8        18        28        38        48        58 |    | 68        78        88        98       108       118       128       138       148       158  
                                                                                        60   65

Chain B from PDB  Type:PROTEIN  Length:157
 aligned with Q256S2_FRAAN | Q256S2 from UniProtKB/TrEMBL  Length:160

    Alignment length:162
                              1                                                                                                                                                               
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158  
         Q256S2_FRAAN     - --MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFGEGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEYN 160
               SCOP domains d4c9cb_ B: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..hhhhhhhhhh.hhhhhhhhhh......eeeee.......eeeee..-----.eeeeeeeeee....eeeeeeee.......eeeeeeeeeeee.....eeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4c9c B  -1 AMAGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG-----GYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEYN 160
                                     8        18        28        38        48        58 |     |68        78        88        98       108       118       128       138       148       158  
                                                                                        60    66

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Alpha and beta proteins (a+b) (23004)

Fold: TBP-like (289)

Superfamily: Bet v1-like (158)

Family: automated matches (39)

Protein domain: automated matches (39)

Fragaria x [TaxId: 3747] (4)

1a	d4c9ca_	A:
1b	d4c9cb_	B:

(no "CATH Domain" information available for 4C9C)

(no "Pfam Domain" information available for 4C9C)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q256S2_FRAAN | Q256S2)

biological process
	GO:0006952		defense response		Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607		response to biotic stimulus		Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

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4c94	CRYSTAL STRUCTURE OF THE STRAWBERRY PATHOGENESIS-RELATED 10 (PR-10) FRA A 3 PROTEIN IN COMPLEX WITH CATECHIN

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