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(-) Description

Title :  CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS UVRD IN COMPLEX WITH DNA, FORM 2
 
Authors :  M. Stelter, S. Acajjaoui, S. Mcsweeney, J. Timmins
Date :  21 Aug 13  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,D,F,I,K,L,X,Y
Biol. Unit 1:  A,D,X,Y  (1x)
Biol. Unit 2:  F,I,K,L  (1x)
Keywords :  Hydrolase-Dna Complex, Dna Repair, Dna Helicases, Nucleotide Excision Repair (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Stelter, S. Acajjaoui, S. Mcsweeney, J. Timmins
Structural And Mechanistic Insight Into Dna Unwinding By Deinococcus Radiodurans Uvrd.
Plos One V. 8 77364 2013
PubMed-ID: 24143224  |  Reference-DOI: 10.1371/JOURNAL.PONE.0077364

(-) Compounds

Molecule 1 - DNA HELICASE II
    Chains: A, D, F, I
    EC Number: 3.6.4.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET151D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL TRUNCATION, RESIDUES 1-665
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
    Synonym: UVRD
 
Molecule 2 - DNA STRAND FOR25
    Chains: X, K
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - DNA STRAND REV25
    Chains: Y, L
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ADFIKLXY
Biological Unit 1 (1x): AD    XY
Biological Unit 2 (1x):   FIKL  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG6Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:14 , GLN A:17 , ALA A:34 , GLY A:35 , SER A:36 , GLY A:37 , LYS A:38 , THR A:39 , ARG A:40 , GLN A:258 , TYR A:290 , ARG A:291 , GLU A:577 , ARG A:617 , MG A:1663 , HOH A:2001 , HOH A:2002 , HOH A:2003BINDING SITE FOR RESIDUE ANP A1662
2AC2SOFTWARETHR A:39 , ANP A:1662 , HOH A:2001 , HOH A:2002 , HOH A:2003BINDING SITE FOR RESIDUE MG A1663
3AC3SOFTWAREASP A:118 , ASP A:391BINDING SITE FOR RESIDUE MG A1664
4AC4SOFTWAREASP D:397 , HOH D:2010 , HOH D:2019 , HOH D:2020 , HOH D:2022 , HOH D:2023BINDING SITE FOR RESIDUE MG D1663
5AC5SOFTWAREALA F:12 , LEU F:13 , ASN F:14 , GLN F:17 , GLY F:33 , ALA F:34 , GLY F:35 , SER F:36 , GLY F:37 , LYS F:38 , THR F:39 , ARG F:40 , GLN F:258 , TYR F:290 , ARG F:291 , GLU F:577 , ARG F:617 , MG F:1665 , HOH F:2001 , HOH F:2002 , HOH F:2003BINDING SITE FOR RESIDUE ANP F1663
6AC6SOFTWAREASP F:118 , ASP F:119BINDING SITE FOR RESIDUE MG F1664
7AC7SOFTWARETHR F:39 , ANP F:1663 , HOH F:2001 , HOH F:2002 , HOH F:2003BINDING SITE FOR RESIDUE MG F1665
8AC8SOFTWAREARG I:396 , ASP I:397BINDING SITE FOR RESIDUE MG I1663

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4C30)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4C30)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C30)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4C30)

(-) Exons   (0, 0)

(no "Exon" information available for 4C30)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:631
 aligned with Q9RTI9_DEIRA | Q9RTI9 from UniProtKB/TrEMBL  Length:745

    Alignment length:655
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656     
         Q9RTI9_DEIRA     7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQP 661
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhh...hhh.eeeee.hhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhh.............hhhhhhhhhh..............hhhhhhhhhhhh....hhhhhhh....-----hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhh....eeeeehhhhh.hhhhh.hhhhhhhhhhhh...eeeee.ee...hhhhhhhhhhhhh..........ee........eeeeeeehhhhhhhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhhhhhhh..eee........hhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhh----------.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..-----hhhhhhhhhhh...hhhhhhhh----....eeeeehhhhh...eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeee..eeee...hhhhhhh....ee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c30 A   7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREP-----PRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACAN----------AHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEA-----IADFLDDAALLSSVDDMRTKAE----PEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQP 661
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166|     |176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446   |     -    |  466       476       486       496       506       516       526  |    536       546       556    |  566       576       586       596       606       616       626       636       646       656     
                                                                                                                                                                                          167   173                                                                                                                                                                                                                                                                                  450        461                                                                 529   535                  556  561                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:642
 aligned with Q9RTI9_DEIRA | Q9RTI9 from UniProtKB/TrEMBL  Length:745

    Alignment length:656
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
         Q9RTI9_DEIRA     7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPI 662
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhhhhh.hhhhheeeehhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhh....---..hhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh....eeeeehhhhh........hhhhhhhhhhh...eeeee......hhhhhhhhhhhhh....................eeeeeeehhhhhhhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhhh..hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....---.hhhhhhhhhh.......--------......eeeeehhhhh...eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeeee......ee...hhhhhhh....eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c30 D   7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPG---ETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEA---GSIADFLDDAALLSSVDD--------GAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPI 662
                                    16        26        36        46        56        66        76        86        96       106       116       126       | - |     146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526  |   |536       546   |     -  |    566       576       586       596       606       616       626       636       646       656      
                                                                                                                                                         134 138                                                                                                                                                                                                                                                                                                                                                                                                    529 533              550      559                                                                                                       


Chain F from PDB  Type:PROTEIN  Length:632
 aligned with Q9RTI9_DEIRA | Q9RTI9 from UniProtKB/TrEMBL  Length:745

    Alignment length:656
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
         Q9RTI9_DEIRA     7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPI 662
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhh...hhh.eeeee.hhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhh..........ee.hhhhhhhhhhhh............hhhhhhhhhh......hhhhhh.....-----hhhhhhhhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhh....eeee......hhhhhhhhhhhhh....eeeeehhhhh.hhhhh...hhhhhhhhhh...eeeee.ee...hhhhhhhhhhhhh..........ee........eeeeeeehhhhhhhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhhhhhhh..eee........hhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhh----------.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....-----hhhhhhhhhhh...hhhhhhhh----....eeeeehhhhh...eeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeee....eee....hhhhhh....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c30 F   7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREP-----PRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACAN----------AHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEA-----IADFLDDAALLSSVDDMRTKAE----PEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPI 662
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166|     |176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446   |     -    |  466       476       486       496       506       516       526  |    536       546       556    |  566       576       586       596       606       616       626       636       646       656      
                                                                                                                                                                                          167   173                                                                                                                                                                                                                                                                                  450        461                                                                 529   535                  556  561                                                                                                     


Chain I from PDB  Type:PROTEIN  Length:638
 aligned with Q9RTI9_DEIRA | Q9RTI9 from UniProtKB/TrEMBL  Length:745

    Alignment length:656
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656      
         Q9RTI9_DEIRA     7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPGIGAETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVGGVGFYDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPI 662
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhhhhh.hhhhheeeehhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhh.....---..hhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh....eeeeehhhhh.......hhhhhhhhhhhh...eeeee......hhhhhhhhhhhhh....................eeeeeeehhhhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhh...eee..----.hhhhhhhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhhhh.hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....---.hhhhhhhhhh.......--------......eeeeehhhhh...eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee......ee...hhhhhhh....eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c30 I   7 PDLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTNKAAAEMRERAGHLVPGAGDLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVMGSIPG---ETQPRVIRGIIDRAKSNLWTPDDLDRSREPFISGLPRDAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKEVPGVLDKVQNKAKFIHVDEYQDTNRAQYELTRLLASRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYPDAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLTRLHGEGRAWSEMAILYRTNAQSRVIEESLRRVQIPARIVG----YDRREIRDILAYARLALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKATEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEWSQDEA---GSIADFLDDAALLSSVDD--------GAPEDAVTLMTLHNAKGLEFPVVFIVGVEQGLLPSKGAIAEGPSGIEEERRLFYVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPI 662
                                    16        26        36        46        56        66        76        86        96       106       116       126       | - |     146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        |-   |   396       406       416       426       436       446       456       466       476       486       496       506       516       526  |   |536       546   |     -  |    566       576       586       596       606       616       626       636       646       656      
                                                                                                                                                         134 138                                                                                                                                                                                                                                                    385  390                                                                                                                                        529 533              550      559                                                                                                       


Chain K from PDB  Type:DNA  Length:23
                                                       
                 4c30 K   1 GCAGTGCTCGCAGGTCGTTTTTT  23
                                    10        20   


Chain L from PDB  Type:DNA  Length:23
                                                       
                 4c30 L   1 ACGACCTGCGAGCACTGCTTTTT  23
                                    10        20   


Chain X from PDB  Type:DNA  Length:23
                                                       
                 4c30 X   1 GCAGTGCTCGCAGGTCGTTTTTT  23
                                    10        20   


Chain Y from PDB  Type:DNA  Length:23
                                                       
                 4c30 Y   1 ACGACCTGCGAGCACTGCTTTTT  23
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4C30)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C30)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C30)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,D,F,I   (Q9RTI9_DEIRA | Q9RTI9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004003    ATP-dependent DNA helicase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0032508    DNA duplex unwinding    The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.

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  4c30
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  3.6.4.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9RTI9_DEIRA | Q9RTI9: 4c2t 4c2u

(-) Related Entries Specified in the PDB File

4c2t CRYSTAL STRUCTURE OF FULL LENGTH DEINOCOCCUS RADIODURANS UVRD IN COMPLEX WITH DNA
4c2u CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS UVRD IN COMPLEX WITH DNA, FORM 1