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(-) Description

Authors :  E. Thinon, R. A. Serwa, J. A. Brannigan, U. Brassat, M. H. Wright, W. P. He A. J. Wilkinson, D. J. Mann, E. W. Tate
Date :  20 Aug 13  (Deposition) - 01 Oct 14  (Release) - 08 Oct 14  (Revision)
Resolution :  2.33
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Myristoylation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  E. Thinon, R. A. Serwa, M. Broncel, J. A. Brannigan, U. Brassat, M. H. Wright, W. P. Heal, A. J. Wilkinson, D. J. Mann, E. W. Tate
Global Profiling Of Co- And Post-Translationally N-Myristoylated Proteomes In Human Cells.
Nat. Commun. V. 5 4919 2014
PubMed-ID: 25255805  |  Reference-DOI: 10.1038/NCOMMS5919

(-) Compounds

    EC Number2.3.1.97
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28 DERIVATIVE
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantPRARES
    Expression System Vector TypePLASMID
    FragmentRESIDUES 112-498
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
1AC1SOFTWARELEU A:254 , ARG A:255 , SER A:256 , LYS A:257 , ARG A:258 , VAL A:259 , NHW A:1000BINDING SITE FOR RESIDUE MG A 999
2AC2SOFTWAREHIS A:115 , TYR A:117 , GLN A:118 , PHE A:119 , TRP A:120 , ASN A:179 , ILE A:245 , ASN A:246 , PHE A:247 , LEU A:248 , CYS A:249 , VAL A:250 , ARG A:255 , SER A:256 , ARG A:258 , VAL A:259 , ALA A:260 , PRO A:261 , ILE A:264 , THR A:268 , VAL A:271 , PHE A:277 , GLN A:278 , TYR A:281 , THR A:282 , ALA A:283 , LEU A:287 , MG A:999 , HOH A:2001 , HOH A:2067 , HOH A:2068BINDING SITE FOR RESIDUE NHW A1000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4C2X)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
1Pro A:288 -Lys A:289
2Arg A:316 -Asn A:317

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C2X)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT2_HUMAN246-254  1A:244-252
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT2_HUMAN468-474  1A:466-472

(-) Exons   (0, 0)

(no "Exon" information available for 4C2X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:388
 aligned with NMT2_HUMAN | O60551 from UniProtKB/Swiss-Prot  Length:498

    Alignment length:388
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhh................................ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------NMT_1    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4C2X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C2X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C2X)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (NMT2_HUMAN | O60551)
molecular function
    GO:0004379    glycylpeptide N-tetradecanoyltransferase activity    Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0018008    N-terminal peptidyl-glycine N-myristoylation    The myristoylation of the N-terminal glycine of proteins to form the derivative N-myristoyl-glycine.
    GO:0006499    N-terminal protein myristoylation    The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein.
    GO:0075733    intracellular transport of virus    The directed movement of a virus, or part of a virus, within the host cell.
    GO:0022400    regulation of rhodopsin mediated signaling pathway    Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0019898    extrinsic component of membrane    The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.


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