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(-) Description

Title :  STRUCTURE OF THE WILD-TYPE TCP10 DOMAIN OF DANIO RERIO CPAP
 
Authors :  M. Van Breugel
Date :  15 Jul 13  (Deposition) - 25 Sep 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Centriole Duplication, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Cottee, N. Muschalik, Y. L. Wong, C. M. Johnson, S. Johnson, A. Andreeva, K. Oegema, S. M. Lea, J. W. Raff, M. Van Breugel
Crystal Structures Of The Cpap-Stil Complex Reveal Its Role In Centriole Assembly And Human Microcephaly
Elife V. 2 01071 2013
PubMed-ID: 24052813  |  Reference-DOI: 10.7554/ELIFE.01071

(-) Compounds

Molecule 1 - CPAP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector: PET28
    Expression System Vector Type: PLASMID
    Fragment: TCP-10 DOMAIN, RESIDUES 937-1124
    Organism Common: ZEBRAFISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Other Details: CDNA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4BXP)

(-) Sites  (0, 0)

(no "Site" information available for 4BXP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BXP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BXP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BXP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BXP)

(-) Exons   (0, 0)

(no "Exon" information available for 4BXP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with E7FCY1_DANRE | E7FCY1 from UniProtKB/TrEMBL  Length:1124

    Alignment length:170
                                   964       974       984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124
        E7FCY1_DANRE    955 RLVVFPNGTRKELSADGQTVKVMFFNGDVKHTMPDQRVIYYYAEAQTTHITYPDGMEVLQFPNNQTEKHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDGSKVIQFNTGQREIHTADFKRREYPDGTVKTVYSDGRQETQYPTGRVRLKDPQGKVIMDTKA 1124
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.....eeee......eeee.....eeee.....eeeee....eeeee.....eeee.....eeee.....eeee.....eeee.....eeee.....eeee.....eeee.....eeee...eeeee.....eeeee....eeee.....eeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4bxp A  955 RLVVFPNGTRKELSADGQTVKVMFFNGDVKHTMPDQRVIYYYAEAQTTHITYPDGMEVLQFPNNQTEKHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDGSKVIQFNTGQREIHTADFKRREYPDGTVKTVYSDGRQETQYPTGRVRLKDPQGKVIMDTKA 1124
                                   964       974       984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104      1114      1124
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BXP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BXP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BXP)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (E7FCY1_DANRE | E7FCY1)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E7FCY1_DANRE | E7FCY1: 4bxq 4bxr 4ld1 4ld3 4lzf

(-) Related Entries Specified in the PDB File

4bxq STRUCTURE OF THE E1021V MUTANT OF THE TCP10 DOMAIN OF DANIO RERIO CPAP
4bxr STRUCTURE OF THE WILD-TYPE TCP10 DOMAIN OF DANIO RERIO CPAP IN COMPLEX WITH A PEPTIDE OF DANIO RERIO STIL