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(-) Description

Title :  STRUCTURAL OF ASPERGILLUS FUMIGATUS UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE
 
Authors :  W. Fang, O. G. Raimi, R. Hurtadoguerrero, D. M. F. Van Aalten
Date :  07 May 13  (Deposition) - 15 May 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Udp-Glcnac Biosynthesis Pathway (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Fang, T. Du, O. G. Raimi, R. Hurtado-Guerrero, M. D. Urbaniak, A. F. Ibrahim, M. A. Ferguson, C. Jin, D. M. Van Aalten
Genetic And Structural Validation Of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase As An Antifungal Target.
Mol. Microbiol. V. 89 479 2013
PubMed-ID: 23750903  |  Reference-DOI: 10.1111/MMI.12290

(-) Compounds

Molecule 1 - UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE
    Chains: A, B
    EC Number: 2.7.7.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYS
    Expression System Vector: PGEX-6P-1
    Expression System Vector Type: PLASMID
    Organism Scientific: ASPERGILLUS FUMIGATUS
    Organism Taxid: 5085

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:134 , ALA A:135 , GLY A:136 , GLY A:137 , MET A:191 , GLN A:222 , GLY A:248 , ASN A:249BINDING SITE FOR RESIDUE GOL A1508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BMA)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ala A:501 -Pro A:502
2Lys B:308 -Arg B:309
3Arg B:309 -Asn B:310
4Asn B:310 -Ala B:311
5Glu B:313 -Ser B:314
6Ala B:501 -Pro B:502

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BMA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BMA)

(-) Exons   (0, 0)

(no "Exon" information available for 4BMA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with Q4WAR0_ASPFU | Q4WAR0 from UniProtKB/TrEMBL  Length:509

    Alignment length:481
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506 
         Q4WAR0_ASPFU    27 PSAEEFQQLRKKYTDAGQGHVFAFVDELQTGERSQLFHQLSSFDPVRINELADKALNPPKADDGPASLEPLPDIATASILDSDPKDLEQWYEEGLKLVAGNKVAVVLMAGGQGTRLGSSAPKGCFDIGLPSHKSLFQIQAERIAKLQLLAQRISGKEAVIPWYVMTSGPTRKPTEEFFEQHKYFGLNKSDVIIFEQGVLPCISNEGKILMESKFKVAVAPDGNGGIYQALLTSGVREDMRKRGIEHIHTYCVDNCLVKVADPVFIGFAASKQVDIATKVVRKRNATESVGLILQKNGKPDVVEYSEIDKETAEAKDPKQPDVLKFRAANIVNHYYSFKFFESIELWAHKLPHHVARKKIPCIKEGTGEFFKPEKPNGIKLEQFVFDVFPMTPLEKFACIEVRREDEFSPLKNARGTGEDDPDTSKRDIMSQGQRWIEKAGGIVITEGDVVGVEVSPLISYGGEGLEFLKGREIKAPAFIEK 507
               SCOP domains d4bmaa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..-----...ee..hhh.eee....hhhhhhhhhhhhhhhhhh..eeeeee............hhhhh........hhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhhh.eeeee..eee.ee......eee..ee.eee.hhhhhhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhh...eeeeeee.........eeeee..eeeeehhhhhhhhhhhh............eeeeeeeeeehhhhhhhhhhhhhh..eeeee......-----------..eeeee.hhhhhhhhhhhh.eeeee.hhhhhh............hhhhhhhhhhhhhhhhhhhh..eeee......eee..........hhhhh..eeee.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bma A  27 PSAEEFQQLRKKYTDAGQGHVFAFVDELQTGERSQLFHQLSSFDPVRINELADKALNPP-----PASLEPLPDIATASILDSDPKDLEQWYEEGLKLVAGNKVAVVLMAGGQGTRLGSSAPKGCFDIGLPSHKSLFQIQAERIAKLQLLAQRISGKEAVIPWYVMTSGPTRKPTEEFFEQHKYFGLNKSDVIIFEQGVLPCISNEGKILMESKFKVAVAPDGNGGIYQALLTSGVREDMRKRGIEHIHTYCVDNCLVKVADPVFIGFAASKQVDIATKVVRKRNATESVGLILQKNGKPDVVEYSEIDKETAEAKDPKQPDVLKFRAANIVNHYYSFKFFESIELWAHKLPHHVARKKIPCIK-----------PNGIKLEQFVFDVFPMTPLEKFACIEVRREDEFSPLKNARGTGEDDPDTSKRDIMSQGQRWIEKAGGIVITEGDVVGVEVSPLISYGGEGLEFLKGREIKAPAFIEK 507
                                    36        46        56        66        76        |-    |   96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386  |      -    |  406       416       426       436       446       456       466       476       486       496       506 
                                                                                     85    91                                                                                                                                                                                                                                                                                                       389         401                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:447
 aligned with Q4WAR0_ASPFU | Q4WAR0 from UniProtKB/TrEMBL  Length:509

    Alignment length:481
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506 
         Q4WAR0_ASPFU    27 PSAEEFQQLRKKYTDAGQGHVFAFVDELQTGERSQLFHQLSSFDPVRINELADKALNPPKADDGPASLEPLPDIATASILDSDPKDLEQWYEEGLKLVAGNKVAVVLMAGGQGTRLGSSAPKGCFDIGLPSHKSLFQIQAERIAKLQLLAQRISGKEAVIPWYVMTSGPTRKPTEEFFEQHKYFGLNKSDVIIFEQGVLPCISNEGKILMESKFKVAVAPDGNGGIYQALLTSGVREDMRKRGIEHIHTYCVDNCLVKVADPVFIGFAASKQVDIATKVVRKRNATESVGLILQKNGKPDVVEYSEIDKETAEAKDPKQPDVLKFRAANIVNHYYSFKFFESIELWAHKLPHHVARKKIPCIKEGTGEFFKPEKPNGIKLEQFVFDVFPMTPLEKFACIEVRREDEFSPLKNARGTGEDDPDTSKRDIMSQGQRWIEKAGGIVITEGDVVGVEVSPLISYGGEGLEFLKGREIKAPAFIEK 507
               SCOP domains d4bmab_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..------..ee......eee....hhhhhhhhhhhhhhhhhh..eeeeeee...hhhhh....hhhh........hhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhhh.eeeee..eee.ee......eee..ee.eee.hhhhhhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhh...eeeeeee.........eeeee..eeeee..---------------------.eeeeeeeeeehhhhhhhhhhhhhh..eeeee.....-------.......eeeee.hhhhhhhhhhhh.eeeee.hhhhhh............hhhhhhhhhhhhhhhhhhhh..eeee......eee..........hhhhh..eeee.eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bma B  27 PSAEEFQQLRKKYTDAGQGHVFAFVDELQTGERSQLFHQLSSFDPVRINELADKALNPP------ASLEPLPDIATASILDSDPKDLEQWYEEGLKLVAGNKVAVVLMAGGQGTRLGSSAPKGCFDIGLPSHKSLFQIQAERIAKLQLLAQRISGKEAVIPWYVMTSGPTRKPTEEFFEQHKYFGLNKSDVIIFEQGVLPCISNEGKILMESKFKVAVAPDGNGGIYQALLTSGVREDMRKRGIEHIHTYCVDNCLVKVADPVFIGFAASKQVDIATKVVRKRNATESVGLILQKNGKPDVVEY---------------------RAANIVNHYYSFKFFESIELWAHKLPHHVARKKIPCI-------FKPEKPNGIKLEQFVFDVFPMTPLEKFACIEVRREDEFSPLKNARGTGEDDPDTSKRDIMSQGQRWIEKAGGIVITEGDVVGVEVSPLISYGGEGLEFLKGREIKAPAFIEK 507
                                    36        46        56        66        76        |-     |  96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326   |     -         -     | 356       366       376       386 |     396       406       416       426       436       446       456       466       476       486       496       506 
                                                                                     85     92                                                                                                                                                                                                                                           330                   352                                 388     396
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BMA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BMA)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q4WAR0_ASPFU | Q4WAR0)
molecular function
    GO:0003977    UDP-N-acetylglucosamine diphosphorylase activity    Catalysis of the reaction: N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = diphosphate + UDP-N-acetyl-alpha-D-glucosamine.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0070569    uridylyltransferase activity    Catalysis of the transfer of an uridylyl group to an acceptor.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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