4BLW - JenaLib

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:4 , HIS A:9 , ASN A:12 , GLU A:60 , VAL A:199 , MET A:235 , NA A:1294 , HOH A:2015 , HOH A:2128 , HOH A:2201 , HOH A:2202	BINDING SITE FOR RESIDUE AMP A1281
02	AC2	SOFTWARE	LEU A:2 , TYR A:4 , LYS A:18 , HIS A:19 , THR A:41 , HIS A:42 , ALA A:43 , GLY A:44 , GLY A:99 , SER A:100 , GLU A:118 , LEU A:119 , HIS A:120 , ALA A:142 , ASP A:143 , GLY A:144 , ASP A:164 , HOH A:2003 , HOH A:2006 , HOH A:2009 , HOH A:2041 , HOH A:2042	BINDING SITE FOR RESIDUE SAH A1282
03	AC3	SOFTWARE	ALA A:66 , ARG A:67 , LYS A:185 , ARG A:186 , PHE A:187 , ALA A:188 , EDO A:1285 , HOH A:2060 , HOH A:2061 , HOH A:2146 , HOH A:2149 , HOH A:2150 , HOH A:2204	BINDING SITE FOR RESIDUE GOL A1283
04	AC4	SOFTWARE	VAL A:155 , SER A:156 , ARG A:157 , HOH A:2205 , GLU B:110 , GLN B:111	BINDING SITE FOR RESIDUE GOL A1284
05	AC5	SOFTWARE	ARG A:67 , PRO A:266 , GOL A:1283 , HOH A:2147 , HOH A:2192	BINDING SITE FOR RESIDUE EDO A1285
06	AC6	SOFTWARE	HIS A:13 , GLU A:60 , GLU A:63 , HOH A:2016 , HOH A:2055 , HOH A:2056	BINDING SITE FOR RESIDUE EDO A1286
07	AC7	SOFTWARE	LEU A:106 , ARG B:90	BINDING SITE FOR RESIDUE EDO A1287
08	AC8	SOFTWARE	SER A:7 , PHE A:8 , HIS A:9 , ALA A:10 , LEU A:50 , ALA A:55 , THR A:58 , GLY A:59 , GLU A:60 , TYR A:61	BINDING SITE FOR RESIDUE EDO A1288
09	AC9	SOFTWARE	PRO A:228 , THR A:269 , GLY A:270	BINDING SITE FOR RESIDUE EDO A1289
10	BC1	SOFTWARE	PRO A:266 , ALA A:267	BINDING SITE FOR RESIDUE EDO A1290
11	BC2	SOFTWARE	LYS A:30 , LEU A:106 , LEU A:107 , LEU A:108 , HOH A:2206 , HOH A:2207	BINDING SITE FOR RESIDUE EDO A1291
12	BC3	SOFTWARE	LEU A:39 , GLN A:115 , LEU A:116 , THR A:117 , ARG A:138 , GLU A:140 , GLN A:147 , LYS A:151 , HOH A:2039	BINDING SITE FOR RESIDUE EDO A1292
13	BC4	SOFTWARE	ARG A:47 , GLU A:130 , SO4 A:1295 , HOH A:2107	BINDING SITE FOR RESIDUE EDO A1293
14	BC5	SOFTWARE	TYR A:4 , PRO A:165 , PRO A:166 , TRP A:195 , AMP A:1281 , HOH A:2019 , HOH A:2126 , HOH A:2128	BINDING SITE FOR RESIDUE NA A1294
15	BC6	SOFTWARE	TYR B:4 , HIS B:9 , ASN B:12 , GLU B:60 , VAL B:199 , MET B:235 , EDO B:1283 , NA B:1287 , HOH B:2009 , HOH B:2013 , HOH B:2078 , HOH B:2080 , HOH B:2115	BINDING SITE FOR RESIDUE AMP B1280
16	BC7	SOFTWARE	TYR B:4 , HIS B:6 , LYS B:18 , HIS B:19 , THR B:41 , HIS B:42 , ALA B:43 , GLY B:99 , SER B:100 , GLU B:118 , LEU B:119 , HIS B:120 , ALA B:142 , ASP B:143 , GLY B:144 , ASP B:164 , EDO B:1284 , HOH B:2001 , HOH B:2005 , HOH B:2007 , HOH B:2028 , HOH B:2029	BINDING SITE FOR RESIDUE SAH B1281
17	BC8	SOFTWARE	LEU B:29 , LYS B:32 , ARG B:158 , HOH B:2076	BINDING SITE FOR RESIDUE GOL B1282
18	BC9	SOFTWARE	TYR B:4 , ARG B:5 , PHE B:8 , HIS B:9 , AMP B:1280	BINDING SITE FOR RESIDUE EDO B1283
19	CC1	SOFTWARE	PRO B:166 , TYR B:167 , GLU B:168 , MET B:169 , ASP B:172 , SAH B:1281 , HOH B:2028 , HOH B:2083	BINDING SITE FOR RESIDUE EDO B1284
20	CC2	SOFTWARE	ALA B:66 , ARG B:67 , HOH B:2042 , HOH B:2044 , HOH B:2094 , HOH B:2096	BINDING SITE FOR RESIDUE EDO B1286
21	CC3	SOFTWARE	ARG A:105 , LYS A:133 , HOH A:2109 , HIS B:87 , PHE B:88 , ASN B:89 , ARG B:90 , SER B:91 , HOH B:2055	BINDING SITE FOR RESIDUE EDO B1285
22	CC4	SOFTWARE	GLU A:110 , HOH A:2096 , TRP B:69 , LYS B:86 , ASN B:89 , ARG B:90	BINDING SITE FOR RESIDUE EDO B1288
23	CC5	SOFTWARE	TYR B:4 , PRO B:165 , PRO B:166 , TRP B:195 , AMP B:1280 , HOH B:2013 , HOH B:2077 , HOH B:2078	BINDING SITE FOR RESIDUE NA B1287
24	CC6	SOFTWARE	HIS A:87 , EDO A:1293 , HOH A:2047 , HOH A:2094 , HOH A:2208 , HIS B:87	BINDING SITE FOR RESIDUE SO4 A1295

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:280
 aligned with RLMJ_ECOLI | P37634 from UniProtKB/Swiss-Prot  Length:280

    Alignment length:280
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
           RLMJ_ECOLI     1 MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGIAEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVPE 280
               SCOP domains d4blwa_ A: automated matches                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh...hhhhhhhhhhhhhhhhhhh......eeee......eee..hhhhhhh.hhhh.hhh.......hhhhhhhhhhhhhh.......eeehhhhhhhhhh....eeeee....hhhhhhhhhhh....eeee.....hhhhhh.......eeeee.......hhhhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhh.....eeeeeee...........eeeeeee....hhhhhhhhhhhhhhhhhh.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------N6_MTAS-------------------------------------------------------------------------N6_MTAS--------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4blw A   1 MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGIAEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVPE 280
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain B from PDB  Type:PROTEIN  Length:279
 aligned with RLMJ_ECOLI | P37634 from UniProtKB/Swiss-Prot  Length:280

    Alignment length:279
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270         
           RLMJ_ECOLI     1 MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGIAEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVP 279
               SCOP domains d4blwb_ B: automated matches                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh...hhhhhhhhhhhhhhhhhhh......eeee......eee..hhhhhhh.hhhh.hhh.......hhhhhhhhhhhhhh.......eeehhhhhhhhhh....eeeee....hhhhhhhhhhh....eeee..hhhhhhhhh.......eeeee.......hhhhhhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhh.....eeeeeee...........eeeeeee....hhhhhhhhhhhhhhhhhh.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------N6_MTAS-------------------------------------------------------------------------N6_MTAS-------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4blw B   1 MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAGAGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPLIARLLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGIAEGYKRFATGIYALWYPVVLRQQIKRMIHDLEATGIRKILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSWIVP 279
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (12, 12)

Asymmetric Unit(hide GO term definitions)

Chain A,B (RLMJ_ECOLI | P37634)

molecular function
	GO:0036307	23S rRNA (adenine(2030)-N(6))-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + adenine(2030) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(2030) in 23S rRNA.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0008988	rRNA (adenine-N6-)-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine.
	GO:0008649	rRNA methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0015976	carbon utilization	A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0070475	rRNA base methylation	The addition of a methyl group to an atom in the nucleoside base portion of a nucleotide residue in an rRNA molecule.
	GO:0006364	rRNA processing	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	4blw
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	2.1.1.266
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 24)

Sites (24, 24)