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(-) Description

Title :  1.50 A RESOLUTION STRUCTURE OF THE MALATE DEHYDROGENASE FROM HALOFERAX VOLCANII
 
Authors :  R. Talon, D. Madern, E. Girard
Date :  28 Mar 13  (Deposition) - 16 Apr 14  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Keywords :  Oxidoreductase, Tricarboxylic Acid Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Talon, E. Girard, B. Franzetti, G. Zaccai, D. Madern
Insight Into Structural Evolution Of Extremophilic Proteins
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MALATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.1.1.37
    Organism Scientific: HALOFERAX VOLCANII
    Organism Taxid: 2246
    Other Details: COMPLETE GENE WAS SYNTHESIZED BY GENECUST EUROPE COMPANY
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 104)

Asymmetric Unit (7, 104)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CL71Ligand/IonCHLORIDE ION
3K23Ligand/IonPOTASSIUM ION
4P331Ligand/Ion3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5PG42Ligand/IonTETRAETHYLENE GLYCOL
6PGE3Ligand/IonTRIETHYLENE GLYCOL
7TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (5, 10)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CL-1Ligand/IonCHLORIDE ION
3K-1Ligand/IonPOTASSIUM ION
4P331Ligand/Ion3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
5PG42Ligand/IonTETRAETHYLENE GLYCOL
6PGE3Ligand/IonTRIETHYLENE GLYCOL
7TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (104, 104)

Asymmetric Unit (104, 104)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREASP A:28 , HOH A:2042 , HOH A:2052 , HOH A:2108 , ASP C:240 , HOH C:2358BINDING SITE FOR RESIDUE K A1305
002AC2SOFTWAREASP A:101 , SER A:105 , THR A:133 , HOH A:2220 , HOH A:2224 , HOH A:2249BINDING SITE FOR RESIDUE K A1306
003AC3SOFTWAREGLU A:109 , 1PE A:1342BINDING SITE FOR RESIDUE K A1307
004AC4SOFTWAREPGE A:1341BINDING SITE FOR RESIDUE K A1308
005AC5SOFTWARESER A:185 , HOH A:2141 , HOH A:2216 , HOH A:2352 , HOH A:2364BINDING SITE FOR RESIDUE K A1309
006AC6SOFTWARESER A:72 , GLY A:86 , ASP A:113 , HOH A:2145 , HOH A:2146 , HOH A:2150BINDING SITE FOR RESIDUE K A1310
007AC7SOFTWAREP33 A:1343 , HOH A:2514BINDING SITE FOR RESIDUE K A1312
008AC8SOFTWAREHOH A:2290 , HOH A:2293 , HOH A:2387BINDING SITE FOR RESIDUE CL A1313
009AC9SOFTWAREVAL A:13 , HOH A:2084 , HOH A:2239BINDING SITE FOR RESIDUE CL A1314
010BC1SOFTWAREGLY A:191 , HOH A:2357 , TRP D:279 , HOH D:2269BINDING SITE FOR RESIDUE CL A1315
011BC2SOFTWAREPRO A:36 , LYS A:37BINDING SITE FOR RESIDUE CL A1316
012BC3SOFTWAREASN A:121 , PRO A:122 , VAL A:123 , HIS A:176 , HOH A:2189BINDING SITE FOR RESIDUE CL A1317
013BC4SOFTWAREARG A:89 , LYS A:295 , GLN A:299BINDING SITE FOR RESIDUE CL A1318
014BC5SOFTWAREARG A:89 , ASN A:121BINDING SITE FOR RESIDUE CL A1319
015BC6SOFTWAREARG A:160 , GLU A:200 , HOH A:2306 , HOH A:2368BINDING SITE FOR RESIDUE CL A1320
016BC7SOFTWAREARG A:152 , THR A:222 , HOH A:2333BINDING SITE FOR RESIDUE CL A1321
017BC8SOFTWAREASN A:192 , PRO A:194 , HOH A:2355 , HOH A:2361BINDING SITE FOR RESIDUE CL A1322
018BC9SOFTWAREASP A:135 , ARG A:136 , HOH A:2219 , HOH A:2232BINDING SITE FOR RESIDUE CL A1323
019CC1SOFTWARETYR A:131 , ARG A:138 , HOH A:2267BINDING SITE FOR RESIDUE CL A1324
020CC2SOFTWAREARG A:136 , ASP A:137 , HOH A:2272BINDING SITE FOR RESIDUE CL A1325
021CC3SOFTWAREASN A:20 , ARG A:24 , HOH A:2031 , HOH B:2083BINDING SITE FOR RESIDUE CL A1326
022CC4SOFTWAREGLN A:223 , HOH A:2024 , GLN B:223 , HOH B:2018BINDING SITE FOR RESIDUE CL A1328
023CC5SOFTWARELYS A:186 , ASP A:280 , HOH A:2474 , ASN D:192 , ASP D:193BINDING SITE FOR RESIDUE CL A1329
024CC6SOFTWAREGLY A:71 , TYR A:110 , ASN A:111 , 1PE A:1342 , HOH A:2179 , HOH A:2233BINDING SITE FOR RESIDUE CL A1330
025CC7SOFTWAREGLN A:209 , HOH A:2392BINDING SITE FOR RESIDUE CL A1338
026CC8SOFTWARE1PE A:1342 , HOH A:2222BINDING SITE FOR RESIDUE CL A1339
027CC9SOFTWAREHOH A:2283 , HOH A:2285 , HOH A:2287 , HOH A:2328 , HOH A:2329 , HOH A:2508 , HOH A:2509 , HOH A:2510 , HOH A:2511BINDING SITE FOR RESIDUE TRS A1340
028DC1SOFTWARETYR A:131 , GLU A:132 , ARG A:136 , K A:1308 , HOH A:2253 , HOH A:2257 , HOH A:2262BINDING SITE FOR RESIDUE PGE A1341
029DC2SOFTWAREALA A:108 , GLU A:109 , TYR A:110 , ASN A:111 , ASP A:178 , K A:1307 , CL A:1330 , CL A:1339BINDING SITE FOR RESIDUE 1PE A1342
030DC3SOFTWAREPHE A:255 , TYR A:257 , ASP A:290 , K A:1312 , ASP D:282 , ASP D:283 , HOH D:2391BINDING SITE FOR RESIDUE P33 A1343
031DC4SOFTWAREASP B:28 , HOH B:2035 , HOH B:2042 , HOH B:2044 , HOH B:2088 , ASP D:240 , HOH D:2346BINDING SITE FOR RESIDUE K B1305
032DC5SOFTWAREASP B:101 , SER B:105 , THR B:133 , HOH B:2179 , HOH B:2208BINDING SITE FOR RESIDUE K B1306
033DC6SOFTWAREGLU B:109 , 1PE B:1342BINDING SITE FOR RESIDUE K B1307
034DC7SOFTWAREPGE B:1341BINDING SITE FOR RESIDUE K B1308
035DC8SOFTWAREHOH B:2241 , HOH B:2242 , HOH B:2333BINDING SITE FOR RESIDUE CL B1313
036DC9SOFTWAREVAL B:13 , HOH B:2077 , HOH B:2197 , HOH B:2352BINDING SITE FOR RESIDUE CL B1314
037EC1SOFTWAREHOH B:2304 , HOH C:2282BINDING SITE FOR RESIDUE CL B1315
038EC2SOFTWAREPRO B:36 , LYS B:37BINDING SITE FOR RESIDUE CL B1316
039EC3SOFTWAREASN B:121 , PRO B:122 , VAL B:123 , HIS B:176 , HOH B:2151BINDING SITE FOR RESIDUE CL B1317
040EC4SOFTWAREARG B:89 , LYS B:295 , GLN B:299BINDING SITE FOR RESIDUE CL B1318
041EC5SOFTWAREARG B:89 , ASN B:121BINDING SITE FOR RESIDUE CL B1319
042EC6SOFTWAREARG B:160 , CL B:1332BINDING SITE FOR RESIDUE CL B1320
043EC7SOFTWAREARG B:152 , THR B:222 , HOH B:2236 , HOH B:2278BINDING SITE FOR RESIDUE CL B1321
044EC8SOFTWAREASN B:192 , HOH B:2109BINDING SITE FOR RESIDUE CL B1322
045EC9SOFTWAREASP B:135 , ARG B:136 , HOH B:2176BINDING SITE FOR RESIDUE CL B1323
046FC1SOFTWARETYR B:131 , ARG B:138 , HOH B:2223BINDING SITE FOR RESIDUE CL B1324
047FC2SOFTWAREASP B:113 , ARG B:136 , ASP B:137 , HOH B:2194BINDING SITE FOR RESIDUE CL B1325
048FC3SOFTWAREARG B:218 , HOH B:2347BINDING SITE FOR RESIDUE CL B1327
049FC4SOFTWAREALA B:195 , PHE B:196 , CL B:1320 , HOH B:2122BINDING SITE FOR RESIDUE CL B1332
050FC5SOFTWARELYS B:3 , ASP B:68 , HOH B:2007 , HOH B:2093 , HOH B:2106BINDING SITE FOR RESIDUE CL B1336
051FC6SOFTWAREHOH A:2289 , GLN B:63 , HOH B:2075 , HOH B:2096BINDING SITE FOR RESIDUE CL B1337
052FC7SOFTWARELYS B:166 , ASP B:169 , HOH B:2237 , HOH B:2238 , HOH B:2239 , HOH B:2265 , HOH B:2266 , HOH B:2273 , HOH B:2441 , HOH B:2442 , HOH B:2443 , HOH B:2444BINDING SITE FOR RESIDUE TRS B1340
053FC8SOFTWARETYR B:131 , GLU B:132 , GLY B:134 , ASP B:135 , ARG B:136 , K B:1308 , HOH B:2221BINDING SITE FOR RESIDUE PGE B1341
054FC9SOFTWAREALA B:108 , GLU B:109 , TYR B:110 , K B:1307BINDING SITE FOR RESIDUE 1PE B1342
055GC1SOFTWAREASP A:240 , HOH A:2418 , HOH A:2421 , HOH A:2422 , ASP C:28 , HOH C:2042 , HOH C:2046BINDING SITE FOR RESIDUE K C1305
056GC2SOFTWAREASP C:101 , SER C:105 , THR C:133 , HOH C:2175 , HOH C:2215BINDING SITE FOR RESIDUE K C1306
057GC3SOFTWAREGLU C:109 , PG4 C:1342BINDING SITE FOR RESIDUE K C1307
058GC4SOFTWAREPG4 C:1341 , HOH C:2223BINDING SITE FOR RESIDUE K C1308
059GC5SOFTWAREHOH B:2115 , SER C:185 , HOH C:2301 , HOH C:2306BINDING SITE FOR RESIDUE K C1309
060GC6SOFTWARESER C:72 , ASP C:113 , HOH C:2056 , HOH C:2122 , HOH C:2125 , HOH C:2128BINDING SITE FOR RESIDUE K C1310
061GC7SOFTWAREHOH A:2388 , HOH A:2389 , ASP C:301 , ILE C:303 , HOH C:2419 , HOH C:2422BINDING SITE FOR RESIDUE K C1311
062GC8SOFTWAREHOH C:2253 , HOH C:2256 , HOH C:2326BINDING SITE FOR RESIDUE CL C1313
063GC9SOFTWAREVAL C:13 , HOH C:2077 , HOH C:2204 , HOH C:2207BINDING SITE FOR RESIDUE CL C1314
064HC1SOFTWAREHOH B:2271 , HOH C:2304BINDING SITE FOR RESIDUE CL C1315
065HC2SOFTWAREPRO C:36 , LYS C:37BINDING SITE FOR RESIDUE CL C1316
066HC3SOFTWAREASN C:121 , PRO C:122 , VAL C:123 , HIS C:176 , HOH C:2152BINDING SITE FOR RESIDUE CL C1317
067HC4SOFTWAREARG C:89 , LYS C:295 , GLN C:299BINDING SITE FOR RESIDUE CL C1318
068HC5SOFTWAREARG C:83 , ARG C:89 , ASN C:121BINDING SITE FOR RESIDUE CL C1319
069HC6SOFTWAREARG C:160 , GLU C:200 , HOH C:2309BINDING SITE FOR RESIDUE CL C1320
070HC7SOFTWAREARG C:152 , THR C:222 , HOH C:2245 , HOH C:2287BINDING SITE FOR RESIDUE CL C1321
071HC8SOFTWAREHOH B:2170 , ASN C:192 , PRO C:194 , HOH C:2302BINDING SITE FOR RESIDUE CL C1322
072HC9SOFTWAREASP C:135 , ARG C:136 , HOH C:2172 , HOH C:2189BINDING SITE FOR RESIDUE CL C1323
073IC1SOFTWAREASN C:20 , ARG C:24 , HOH C:2031 , HOH D:2074BINDING SITE FOR RESIDUE CL C1326
074IC2SOFTWAREMET C:213 , ARG C:218 , CL C:1334BINDING SITE FOR RESIDUE CL C1327
075IC3SOFTWAREASP B:193 , LYS C:186 , ASP C:280BINDING SITE FOR RESIDUE CL C1329
076IC4SOFTWAREMET C:213 , ARG C:218 , CL C:1327 , HOH C:2135 , HOH C:2337BINDING SITE FOR RESIDUE CL C1334
077IC5SOFTWAREASP A:102 , GLU A:109 , TYR C:131 , GLU C:132 , GLY C:134 , ASP C:135 , ARG C:136 , K C:1308 , HOH C:2223BINDING SITE FOR RESIDUE PG4 C1341
078IC6SOFTWAREALA C:108 , GLU C:109 , TYR C:110 , ASN C:111 , ASP C:112 , K C:1307BINDING SITE FOR RESIDUE PG4 C1342
079IC7SOFTWAREASP B:240 , HOH B:2361 , HOH B:2362 , HOH B:2363 , ASP D:28 , HOH D:2031BINDING SITE FOR RESIDUE K D1305
080IC8SOFTWAREASP D:101 , SER D:105 , THR D:133 , HOH D:2070BINDING SITE FOR RESIDUE K D1306
081IC9SOFTWAREGLU D:109BINDING SITE FOR RESIDUE K D1307
082JC1SOFTWAREGLY D:134 , ASP D:135 , PGE D:1341 , HOH D:2216BINDING SITE FOR RESIDUE K D1308
083JC2SOFTWAREHOH A:2142 , SER D:185 , HOH D:2287 , HOH D:2289 , HOH D:2294BINDING SITE FOR RESIDUE K D1309
084JC3SOFTWAREVAL D:156 , HOH D:2243 , HOH D:2245 , HOH D:2315BINDING SITE FOR RESIDUE CL D1313
085JC4SOFTWAREVAL D:13 , HOH D:2066 , HOH D:2135 , HOH D:2200BINDING SITE FOR RESIDUE CL D1314
086JC5SOFTWAREHOH A:2326 , HOH D:2292BINDING SITE FOR RESIDUE CL D1315
087JC6SOFTWAREPRO D:36 , LYS D:37BINDING SITE FOR RESIDUE CL D1316
088JC7SOFTWAREASN D:121 , PRO D:122 , VAL D:123 , HIS D:176 , HOH D:2149BINDING SITE FOR RESIDUE CL D1317
089JC8SOFTWAREARG D:89 , LYS D:295 , GLN D:299BINDING SITE FOR RESIDUE CL D1318
090JC9SOFTWAREARG D:83 , ARG D:89 , ASN D:121BINDING SITE FOR RESIDUE CL D1319
091KC1SOFTWAREARG D:160BINDING SITE FOR RESIDUE CL D1320
092KC2SOFTWAREARG D:152 , THR D:222 , HOH D:2240 , HOH D:2273 , HOH D:2336BINDING SITE FOR RESIDUE CL D1321
093KC3SOFTWAREHOH A:2211 , ASN D:192 , HOH D:2290BINDING SITE FOR RESIDUE CL D1322
094KC4SOFTWAREGLY D:134 , ASP D:135 , HOH D:2070 , HOH D:2177 , HOH D:2178BINDING SITE FOR RESIDUE CL D1323
095KC5SOFTWARETYR D:131 , ASP D:137 , ARG D:138 , HOH D:2228BINDING SITE FOR RESIDUE CL D1324
096KC6SOFTWAREASP D:113 , ARG D:136 , ASP D:137 , HOH D:2196BINDING SITE FOR RESIDUE CL D1325
097KC7SOFTWAREHOH C:2092 , ASN D:20 , ARG D:24 , HOH D:2022BINDING SITE FOR RESIDUE CL D1326
098KC8SOFTWAREARG D:218 , HOH D:2331BINDING SITE FOR RESIDUE CL D1327
099KC9SOFTWAREGLN C:223 , GLN D:223BINDING SITE FOR RESIDUE CL D1328
100LC1SOFTWAREGLY D:71BINDING SITE FOR RESIDUE CL D1330
101LC2SOFTWARELEU D:205 , HOH D:2106 , HOH D:2121 , HOH D:2283BINDING SITE FOR RESIDUE CL D1331
102LC3SOFTWAREHOH D:2366 , HOH D:2367BINDING SITE FOR RESIDUE CL D1333
103LC4SOFTWARETYR C:55 , ARG D:154 , THR D:171 , PRO D:246 , HOH D:2353BINDING SITE FOR RESIDUE CL D1335
104LC5SOFTWARETYR D:131 , GLU D:132 , GLY D:134 , ASP D:135 , ARG D:136 , K D:1308 , HOH D:2215 , HOH D:2427BINDING SITE FOR RESIDUE PGE D1341

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BGU)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asn A:121 -Pro A:122
2Asn B:121 -Pro B:122
3Asn C:121 -Pro C:122
4Asn D:121 -Pro D:122

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BGU)

(-) Exons   (0, 0)

(no "Exon" information available for 4BGU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with MDH_HALVD | Q9P9L2 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   
            MDH_HALVD     2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhh...hhh.eee.hhhhhhhhhhhhhhhhhh.hhh.ee..eee.....eee.hhhhee.......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bgu A   2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   


Chain B from PDB  Type:PROTEIN  Length:303
 aligned with MDH_HALVD | Q9P9L2 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   
            MDH_HALVD     2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhh...hhh.eee.hhhhhhhhhhhhhhhhhh.hhh.ee..eee.....eee.hhhhee.......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bgu B   2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   


Chain C from PDB  Type:PROTEIN  Length:303
 aligned with MDH_HALVD | Q9P9L2 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   
            MDH_HALVD     2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhh...hhh.eee.hhhhhhhhhhhhhhhhhh.hhh.ee..eee.....eee.hhhhee.......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bgu C   2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   


Chain D from PDB  Type:PROTEIN  Length:303
 aligned with MDH_HALVD | Q9P9L2 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   
            MDH_HALVD     2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhh.....eeee...hhhhhhhhhhhh...hhh.eee.hhhhhhhhhhhhhhhhhh.hhh.ee..eee.....eee.hhhhee.......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeeeee.hhh.eeeeeeeeeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bgu D   2 TKVSVIGAAGTVGAAAGYNLALRDVCDELVFVDIPKMEDKTVGQAADTNHGIAYDSNTVVTQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMDDIGSSLAEYNDDFVSITTSNPVDLLNRHLYETGDRDRHKVIGFGGRLDSARFRYVLSQRFDVPVKNVDATILGEHGDAQVPVFSKVRVDGNDPAFSADEKEEILGDLQESAMDVIERKGATQWGPATGVAHMVEAVLHDTGEVLPGSLVLDGEFGYEDTAFGVPVKLGSNGIEEVVEWDLDDYEADLMDDAAEKLRDQYDEIA 304
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BGU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BGU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BGU)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (MDH_HALVD | Q9P9L2)
molecular function
    GO:0030060    L-malate dehydrogenase activity    Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0019752    carboxylic acid metabolic process    The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006099    tricarboxylic acid cycle    A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.

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  4bgu
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  MDH_HALVD | Q9P9L2
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  1.1.1.37
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4BGU)

(-) Related Entries Specified in the PDB File

4bgt 1.70 A RESOLUTION STRUCTURE OF THE MALATE DEHYDROGENASE FROM CHLOROFLEXUS AURANTIACUS
4bgv 1.8 A RESOLUTION STRUCTURE OF THE MALATE DEHYDROGENASE FROM PICROPHILUS TORRIDUS IN ITS APO FORM