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(-) Description

Title :  THE COMPLEX STRUCTURE OF THE BACTERIAL ALDO-KETO REDUCTASE AKR14A1 WITH NADP AND CITRATE
 
Authors :  X. Zhu, E. M. Ellis, A. Lapthorn
Date :  16 May 12  (Deposition) - 06 Jun 12  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Lapthorn, X. Zhu, E. M. Ellis
The Diversity Of Microbial Aldo/Keto Reductases From Escherichia Coli K12.
Chem. Biol. Interact V. 202 168 2013
PubMed-ID: 23103600  |  Reference-DOI: 10.1016/J.CBI.2012.10.008

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE AKR14A1
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector: PET15B
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI K-12
    Organism Taxid: 83333

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1FLC8Ligand/IonCITRATE ANION
2NAP7Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:31 , LEU A:32 , TRP A:33 , ASN A:35 , ASP A:61 , TYR A:66 , HIS A:138 , SER A:168 , GLN A:193 , PHE A:222 , THR A:223 , PRO A:224 , LEU A:225 , GLN A:227 , LYS A:233 , LEU A:299 , ILE A:300 , GLY A:301 , ALA A:302 , SER A:303 , GLN A:307 , GLU A:310 , ASN A:311 , FLC A:501 , HOH A:2036BINDING SITE FOR RESIDUE NAP A 500
02AC2SOFTWARETRP A:33 , ASN A:65 , TYR A:66 , TYR A:100 , HIS A:138 , NAP A:500BINDING SITE FOR RESIDUE FLC A 501
03AC3SOFTWAREGLY B:31 , LEU B:32 , TRP B:33 , ASN B:35 , ASP B:61 , TYR B:66 , HIS B:138 , SER B:168 , GLN B:193 , PHE B:222 , THR B:223 , PRO B:224 , LEU B:225 , ALA B:226 , GLN B:227 , GLY B:228 , LYS B:233 , SER B:242 , ARG B:243 , ARG B:246 , LEU B:299 , GLY B:301 , ALA B:302 , SER B:303 , GLN B:307 , GLU B:310 , ASN B:311 , TRP B:340 , FLC B:501 , HOH B:2031 , HOH B:2036 , HOH B:2075BINDING SITE FOR RESIDUE NAP B 500
04AC4SOFTWARETRP B:33 , ASN B:65 , TYR B:66 , TYR B:100 , HIS B:138 , TRP B:340 , NAP B:500BINDING SITE FOR RESIDUE FLC B 501
05AC5SOFTWAREGLY C:31 , LEU C:32 , TRP C:33 , ASN C:35 , ASP C:61 , TYR C:66 , HIS C:138 , SER C:168 , GLN C:193 , PHE C:222 , THR C:223 , PRO C:224 , LEU C:225 , ALA C:226 , GLN C:227 , LYS C:233 , SER C:242 , ARG C:243 , LEU C:299 , ILE C:300 , GLY C:301 , ALA C:302 , SER C:303 , GLN C:307 , GLU C:310 , ASN C:311 , FLC C:501 , HOH C:2021 , HOH C:2142BINDING SITE FOR RESIDUE NAP C 500
06AC6SOFTWARETRP C:33 , ASN C:65 , TYR C:66 , TYR C:100 , HIS C:138 , TRP C:340 , NAP C:500BINDING SITE FOR RESIDUE FLC C 501
07AC7SOFTWARETRP D:33 , ASN D:65 , TYR D:66 , TYR D:100 , HIS D:138 , PHE D:222 , HOH D:2025 , HOH D:2160 , HOH D:2161BINDING SITE FOR RESIDUE FLC D 501
08AC8SOFTWAREGLY E:31 , LEU E:32 , TRP E:33 , ASN E:35 , ASP E:61 , TYR E:66 , SER E:168 , GLN E:193 , PHE E:222 , THR E:223 , PRO E:224 , LEU E:225 , ALA E:226 , GLN E:227 , THR E:231 , LYS E:233 , LEU E:299 , ILE E:300 , GLY E:301 , SER E:303 , GLN E:307 , GLU E:310 , ASN E:311 , FLC E:501 , HOH E:2020 , HOH E:2061BINDING SITE FOR RESIDUE NAP E 500
09AC9SOFTWARETRP E:33 , ASN E:65 , TYR E:66 , TYR E:100 , HIS E:138 , TRP E:340 , NAP E:500 , HOH E:2023BINDING SITE FOR RESIDUE FLC E 501
10BC1SOFTWAREGLY F:31 , LEU F:32 , TRP F:33 , ASN F:35 , ASP F:61 , TYR F:66 , HIS F:138 , SER F:168 , GLN F:193 , PHE F:222 , THR F:223 , PRO F:224 , LEU F:225 , ALA F:226 , GLN F:227 , LEU F:299 , ILE F:300 , GLY F:301 , ALA F:302 , SER F:303 , GLN F:307 , GLU F:310 , ASN F:311 , FLC F:501 , HOH F:2070 , HOH F:2136BINDING SITE FOR RESIDUE NAP F 500
11BC2SOFTWARETRP F:33 , ASN F:65 , TYR F:66 , TYR F:100 , HIS F:138 , NAP F:500 , HOH F:2034 , HOH F:2035BINDING SITE FOR RESIDUE FLC F 501
12BC3SOFTWAREGLY G:31 , LEU G:32 , TRP G:33 , ASN G:35 , ASP G:61 , TYR G:66 , HIS G:138 , SER G:168 , GLN G:193 , PHE G:222 , THR G:223 , PRO G:224 , LEU G:225 , ALA G:226 , GLN G:227 , LYS G:233 , SER G:242 , ARG G:243 , ARG G:246 , LEU G:299 , ILE G:300 , GLY G:301 , ALA G:302 , SER G:303 , GLN G:307 , GLU G:310 , ASN G:311 , TRP G:340 , FLC G:501 , HOH G:2028 , HOH G:2058 , HOH G:2112BINDING SITE FOR RESIDUE NAP G 500
13BC4SOFTWARETRP G:33 , ASN G:65 , TYR G:66 , TYR G:100 , HIS G:138 , TRP G:340 , NAP G:500 , HOH G:2043BINDING SITE FOR RESIDUE FLC G 501
14BC5SOFTWAREGLY H:31 , LEU H:32 , TRP H:33 , ASN H:35 , ASP H:61 , TYR H:66 , HIS H:138 , SER H:168 , GLN H:193 , PHE H:222 , THR H:223 , PRO H:224 , LEU H:225 , ALA H:226 , GLN H:227 , LEU H:299 , ILE H:300 , GLY H:301 , ALA H:302 , SER H:303 , GLN H:307 , GLU H:310 , ASN H:311 , TRP H:340 , FLC H:501 , HOH H:2015 , HOH H:2019 , HOH H:2051 , HOH H:2102BINDING SITE FOR RESIDUE NAP H 500
15BC6SOFTWARETRP H:33 , ASN H:65 , TYR H:66 , TYR H:100 , HIS H:138 , TRP H:340 , NAP H:500 , HOH H:2042BINDING SITE FOR RESIDUE FLC H 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AUB)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Gly A:67 -Pro A:68
2Pro A:68 -Pro A:69
3Gly B:67 -Pro B:68
4Pro B:68 -Pro B:69
5Gly C:67 -Pro C:68
6Pro C:68 -Pro C:69
7Gly D:67 -Pro D:68
8Pro D:68 -Pro D:69
9Gly E:67 -Pro E:68
10Pro E:68 -Pro E:69
11Gly F:67 -Pro F:68
12Pro F:68 -Pro F:69
13Gly G:67 -Pro G:68
14Pro G:68 -Pro G:69
15Gly H:67 -Pro H:68
16Pro H:68 -Pro H:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AUB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AUB)

(-) Exons   (0, 0)

(no "Exon" information available for 4AUB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:312
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:337
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
            GPR_ECOLI     2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELN 338
               SCOP domains d4auba_ A: automated matches                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeee......hhhhh.-------------------------.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......eeee...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub A   2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK-------------------------LTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELN 338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231 |       -         -       261       271       281       291       301       311       321       331       
                                                                                                                                                                                                                                                                 233                       259                                                                               


Chain B from PDB  Type:PROTEIN  Length:335
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:344
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342    
            GPR_ECOLI     3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
               SCOP domains d4aubb_ B: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeeee..hhhhhhhh..............---------....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...hhhhhhhhhhhhhh...hhhhhhhhhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub B   3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHR---------PKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   |     -   |   262       272       282       292       302       312       322       332       342    
                                                                                                                                                                                                                                                                             246       256                                                                                          


Chain C from PDB  Type:PROTEIN  Length:330
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:345
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341     
            GPR_ECOLI     2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
               SCOP domains d4aubc_ C: automated matches                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeee...hhhhhhhh............-----------....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...hhhhhhhhhhhhhh...hhhhhhhhh----......hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub C   2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRM-----------PKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQID----DGELNLWQASSDK 346
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  |      -    |  261       271       281       291       301       311       321       | -  |    341     
                                                                                                                                                                                                                                                                            244         256                                                                      329  334            


Chain D from PDB  Type:PROTEIN  Length:308
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:335
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332     
            GPR_ECOLI     3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGEL 337
               SCOP domains d4aubd_ D: automated matches                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeeee.........---------------------------.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub D   3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT---------------------------LTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGEL 337
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        |-         -         -      |262       272       282       292       302       312       322       332     
                                                                                                                                                                                                                                                              231                         259                                                                              


Chain E from PDB  Type:PROTEIN  Length:297
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:345
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341     
            GPR_ECOLI     2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
               SCOP domains d4aube_ E: automated matches                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhhh.eeeee..hhhhhhhh.-----------------------------------hhhhhhhhh..hhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh...-------------......hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub E   2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK-----------------------------------LLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTF-------------DGELNLWQASSDK 346
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231 |       -         -         -       271       281       291       301       311        |-         -  |    341     
                                                                                                                                                                                                                                                                 233                                 269                                                320           334            


Chain F from PDB  Type:PROTEIN  Length:298
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
            GPR_ECOLI     3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHI 332
               SCOP domains d4aubf_ F: automated matches                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhh.eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeeee..hhhhh..--------------------------------hhhhhhhhhhhhhhh.hhhhhhhhhhh......eeee...hhhhhhhhhhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4aub F   3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT--------------------------------LNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHI 332
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        |-         -         -         - |     272       282       292       302       312       322       332
                                                                                                                                                                                                                                                              231                              264                                                                    


Chain G from PDB  Type:PROTEIN  Length:335
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:345
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341     
            GPR_ECOLI     2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
               SCOP domains d4aubg_ G: automated matches                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeeee..hhhhhhhh.........hhhhh-------.hhhhh...---hhhhhhhhhhhhh.hhhhhhhhhhh......eeee...hhhhhhhhhhhhhh...hhhhhhhhhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub G   2 VWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHR-------LTPKMLTEA---SLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241    |    -  |    261|   |  271       281       291       301       311       321       331       341     
                                                                                                                                                                                                                                                                              246     254     262 266                                                                                


Chain H from PDB  Type:PROTEIN  Length:297
 aligned with GPR_ECOLI | Q46851 from UniProtKB/Swiss-Prot  Length:346

    Alignment length:344
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342    
            GPR_ECOLI     3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIADGELNLWQASSDK 346
               SCOP domains d4aubh_ H: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee......eee.eeee.........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhh..hhhhheeeeee.............hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhh..eeeee..hhhhh..--------------------------------------hhhhhhhhh.hhhhhhhhhhhh.....eeee...hhhhhhhhhhhhhh........---------.....hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aub H   3 WLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT--------------------------------------LNEMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKEL---------GELNLWQASSDK 346
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        |-         -         -         -       272       282       292       302       312       322  |      -  |    342    
                                                                                                                                                                                                                                                              231                                    270                                                    325       335
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AUB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AUB)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (GPR_ECOLI | Q46851)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0009438    methylglyoxal metabolic process    The chemical reactions and pathways involving methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GPR_ECOLI | Q46851: 3n6q 4ast

(-) Related Entries Specified in the PDB File

4ast THE APO STRUCTURE OF A BACTERIAL ALDO-KETO REDUCTASE AKR14A1