4ASA - JenaLib

Title :   THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N-TERMINAL HSP90

Authors :   S. M. Roe, C. Prodromou

Date :   30 Apr 12 (Deposition) - 03 Apr 13 (Release) - 03 Apr 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Chaperone, Inhibition, Ansamycin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. R. A. Kitson, C. Chang, R. Xiong, H. E. L. Williams, A. L. Davis, W. Lewis, D. L. Dehn, D. Siegel, S. M. Roe, C. Prodromou, D. Ross, C. J. Moody
Synthesis Of 19-Substituted Geldanamycins With Altered Conformations And Their Binding To Heat Shock Protein Hsp90.
Nat. Chem. V. 5 307 2013
PubMed-ID: 23511419 | Reference-DOI: 10.1038/NCHEM.1596

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (1, 1)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:213
 aligned with HSP82_YEAST | P02829 from UniProtKB/Swiss-Prot  Length:709

    Alignment length:213
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211   
          HSP82_YEAST     2 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 214
               SCOP domains d4asaa_ A: HSP90                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..hhhhhh......eeeeeehhh.eeeeee.....hhhhhhhhh......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeee....eeeeee.........eeeeeeee.hhhhhhhhhhhhhhhhhhhh......eee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------HSP90     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:2-214 UniProt: 1-709 [INCOMPLETE]                                                                                                                                                                    Transcript 1
                 4asa A   2 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 214
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

Asymmetric Unit(hide GO term definitions)

Chain A (HSP82_YEAST | P02829)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0042623	ATPase activity, coupled	Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
biological process
	GO:0006458	'de novo' protein folding	The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure.
	GO:0000492	box C/D snoRNP assembly	The aggregation, arrangement and bonding together of proteins and a box C/D snoRNA to form a box C/D small nucleolar ribonucleoprotein (snoRNP) complex.
	GO:0032212	positive regulation of telomere maintenance via telomerase	Any process that activates or increases the frequency, rate or extent of the addition of telomeric repeats by telomerase.
	GO:0043248	proteasome assembly	The aggregation, arrangement and bonding together of a mature, active proteasome complex.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0042026	protein refolding	The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones.
	GO:0006626	protein targeting to mitochondrion	The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein.
	GO:0032204	regulation of telomere maintenance	Any process that modulates the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.
	GO:0006970	response to osmotic stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1a4h	STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE IN COMPLEX WITH GELDANAMYCIN
1ah6	STRUCTURE OF THE TETRAGONAL FORM OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE
1ah8	STRUCTURE OF THE ORTHORHOMBIC FORM OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE
1am1	ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE
1amw	ADP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE
1bgq	RADICICOL BOUND TO THE ATP BINDING SITE OF THE N- TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE
1hk7	MIDDLE DOMAIN OF HSP90
1us7	COMPLEX OF HSP90 AND P50
1usu	THE STRUCTURE OF THE COMPLEX BETWEEN AHA1 AND HSP90
1usv	THE STRUCTURE OF THE COMPLEX BETWEEN AHA1 AND HSP90
1zw9	YEAST HSP82 IN COMPLEX WITH THE NOVEL HSP90 INHIBITOR 8-(6-BROMO-BENZO[1,3]DIOXOL-5-YLSULFANYL)-9-(3- ISOPROPYLAMINO-PROPYL)-ADENINE
1zwh	YEAST HSP82 IN COMPLEX WITH THE NOVEL HSP90 INHIBITORRADESTER AMINE
2akp	HSP90 DELTA24-N210 MUTANT
2brc	STRUCTURE OF A HSP90 INHIBITOR BOUND TO THE N- TERMINUS OF YEAST HSP90.
2bre	STRUCTURE OF A HSP90 INHIBITOR BOUND TO THE N- TERMINUS OF YEAST HSP90.
2cg9	CRYSTAL STRUCTURE OF AN HSP90-SBA1 CLOSED CHAPERONE COMPLEX
2cge	CRYSTAL STRUCTURE OF AN HSP90-SBA1 CLOSED CHAPERONE COMPLEX
2cgf	A RADICICOL ANALOGUE BOUND TO THE ATP BINDING SITE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE
2iws	RADICICOL ANALOGUES BOUND TO THE ATP SITE OF HSP90
2iwu	ANALOGUES OF RADICICOL BOUND TO THE ATP-BINDING SITE OF HSP90.
2iwx	ANALOGUES OF RADICICOL BOUND TO THE ATP-BINDING SITE OF HSP90.
2vw5	STRUCTURE OF THE HSP90 INHIBITOR 7-O- CARBAMOYLPREMACBECIN BOUND TO THE N- TERMINUS OF YEAST HSP90
2vwc	STRUCTURE OF THE HSP90 INHIBITOR MACBECIN BOUND TO THE N-TERMINUS OF YEAST HSP90.
2wep	YEAST HSP90 N-TERMINAL DOMAIN LI-IV MUTANT WITH ADP
2weq	YEAST HSP90 N-TERMINAL DOMAIN LI-IV MUTANT WITH GELDANAMYCIN
2wer	YEAST HSP90 N-TERMINAL DOMAIN LI-IV MUTANT WITH RADICICOL
2xd6	HSP90 COMPLEXED WITH A RESORCYLIC ACID MACROLACTONE.
2xx2	MACROLACTONE INHIBITOR BOUND TO HSP90 N-TERM
2xx4	MACROLACTONE INHIBITOR BOUND TO HSP90 N-TERM
2xx5	MACROLACTONE INHIBITOR BOUND TO HSP90 N-TERM
2yga	E88G-N92L MUTANT OF N-TERM HSP90 COMPLEXED WITH GELDANAMYCIN
2yge	E88G-N92L MUTANT OF N-TERM HSP90 COMPLEXED WITH GELDANAMYCIN
2ygf	L89V, L93I AND V136M MUTANT OF N-TERM HSP90 COMPLEXED WITH GELDANAMYCIN
4as9	THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N-TERMINAL HSP90
4asb	THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N-TERMINAL HSP90
4asf	THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N-TERMINAL HSP90
4asg	THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N-TERMINAL HSP90

Description